Gene omics information

Query gene ID	Zm.15857.1.A1_at
Gene name	calcium-dependent protein kinase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.15857.1.A1_at	D85039.1	calcium-dependent protein kinase	-	2e-36	At1g50700	CPK33	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.955.1.S1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	S.X.	H.G.	Please select
0.22	16.9	Zm.6435.1.A1_at	BM078602	hypothetical protein LOC100217154	-	1e-5	At2g22370	unknown protein	S.X.	H.G.	Please select
0.14	7.7	Zm.16320.1.S1_at	CO526259	hypothetical protein LOC100193231	-	3e-6	At3g19910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.06	2.3	Zm.11694.1.A1_at	CK369414	R2R3MYB-domain protein	-	2e-5	At3g12820	AtMYB10 (myb domain protein 10)	S.X.	H.G.	Please select
0.05	1.9	ZmAffx.13.1.S1_s_at	AY372245.1	cellulose synthase 11	-	2e-61	At4g18780	IRX1 (IRREGULAR XYLEM 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	96.6	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.7	96.5	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.4	96.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	1493	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select
0.06	4e-11	69	Zm.19155.1.S1_at	CA401905	calcium-dependent protein kinase, isoform 2	-	9e-29	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.03	2e-9	63	Zm.39.1.S1_at	D87042.1	Calcium-dependent protein kinase	-	1e-25	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	C.G.	S.X.	Please select
0.03	2e-9	63	Zm.39.1.S1_s_at	D87042.1	Calcium-dependent protein kinase	-	1e-25	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	C.G.	S.X.	Please select
0.04	2e-9	63	Zm.20.1.S1_at	D84408.1	calcium dependent protein kinase	-	4e-25	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.06	3e-8	59	Zm.6306.1.A1_a_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.06	3e-8	59	Zm.6306.1.A1_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.07	3e-8	59	Zm.17082.1.S1_s_at	AY108221.1	-	-	4e-12	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.07	3e-8	59	Zm.17082.1.S1_at	AY108221.1	-	-	4e-12	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-36	155	Arabidopsis thaliana	At1g50700	841492	CPK33	member of Calcium Dependent Protein Kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	3e-17	91	Glycine max	Gma.8111.1.S1_at	U69174.1	calmodulin-like domain protein kinase isoenzyme gamma	-	3e-57	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select
0.66	0	934	Hordeum vulgare	Contig5679_at	Contig5679	-	-	7e-42	At4g21940	CPK15	C.G.	S.X.	Please select
0.59	0	948	Oryza sativa	Os07g0515100	AK074028.1	-	Calcium-dependent protein kinase, isoform 2 (EC2.7.1.-) (CDPK 2)	2e-32	At1g50700	CPK33	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	5e-22	107	Populus trichocarpa	PtpAffx.203676.1.S1_at	pmrna7282	calcium dependent protein kinase 15	-	1e-51	At4g04720	CPK21	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	6e-166	585	Triticum aestivum	Ta.2423.1.S1_at	BT009467.1	Calcium-dependent protein kinase	-	3e-23	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select
0.08	7e-18	91	Vitis vinifera	1610931_at	CF206616.1	-	-	2e-9	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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