CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.15818.1.S1_at

Gene name ferredoxin5

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.15818.1.S1_at M73828.1 ferredoxin5 - 8e-2 At1g10960 ATFD1 (FERREDOXIN 1) S.X. H.G.
0.55 71.6 Zm.13265.1.S1_at AY110086.1 - - 1e-3 At1g12240 ATBETAFRUCT4 S.X. H.G.
0.40 48.5 Zm.10793.1.A1_at CF635868 - - 5e-9 At4g04770 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) S.X. H.G.
0.35 38.9 Zm.5646.2.A1_x_at AW257823 hypothetical protein LOC100191650 - 3e-41 At1g04750 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) S.X. H.G.
0.33 36.0 Zm.17181.1.S1_at CK145306 - - 7e-17 At1g64660 ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) S.X. H.G.
0.31 31.6 Zm.8729.1.A1_at BM339706 hypothetical protein LOC100277693 - 2e-2 At3g42310 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.8 GSM253268 ZM_4.5d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
7.1 97.7 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
5.9 97.3 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.9 96.7 GSM253256 ZM_2d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
4.9 96.7 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM202283 Mo17xB73 11-day seedling aerial tissue biological replicate 2 GSE8174 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
4.2 96.0 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2 96.0 GSM253263 ZM_4d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.0 95.8 GSM202284 B73xMo17 11-day seedling aerial tissue biological replicate 2 GSE8174 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
4.0 95.8 GSM253258 ZM_2d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 5e-137 486 Zm.7282.1.A1_at AB016810.1 ferredoxin2 - 3e-2 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
0.41 1e-121 434 Zm.2.1.A1_at BM347992 Ferredoxin1 - 2e+0 At3g22820 allergen-related C.G. S.X.
0.40 2e-120 430 Zm.3153.2.S1_x_at AY103722.1 ferredoxin1 /// ferredoxin5 - 2e+0 At3g22820 allergen-related C.G. S.X.
0.40 2e-120 430 Zm.3153.2.S1_s_at AY103722.1 ferredoxin1 /// ferredoxin5 - 2e+0 At3g22820 allergen-related C.G. S.X.
0.37 5e-75 280 Zm.1630.1.S1_at AW927809 - - 4e-1 At2g34340 unknown protein C.G. S.X.
0.27 6e-13 73 Zm.3757.1.A1_at CB351276 ferredoxin-3 - 1e+0 At4g00670 DNA binding C.G. S.X.
0.11 6e-10 63 Zm.9901.1.A1_at CF633429 Hypothetical protein LOC100191704 - 8e+0 At4g05000 VPS28-2 C.G. S.X.
0.11 4e-8 57 Zm.136.1.S1_at AB001385.1 Fd VI - 3e+1 Atmg00540 - C.G. S.X.
0.04 1e-4 46 Zm.11821.1.A1_at AY109049.1 hypothetical protein LOC100192061 - 4e-7 At5g01220 SQD2 (sulfoquinovosyldiacylglycerol 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 8e-2 38 Arabidopsis thaliana At1g10960 837639 ATFD1 (FERREDOXIN 1) F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast stroma, chloroplast;BOPAFMV - - - C.G. S.X.
0.08 2e-9 63 Glycine max Gma.13333.1.A1_at CD391431 - - 3e-5 At1g60950 FED A C.G. S.X.
0.35 2e-81 301 Hordeum vulgare Contig1307_at Contig1307 - - 5e-1 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
0.33 5e-51 202 Oryza sativa Os08g0104600 D30763.1 - Ferredoxin I, chloroplast precursor (Anti-diseaseprotein 1) 6e-33 At4g24190 SHD (SHEPHERD) C.G. S.X.
0.07 2e-3 44 Populus trichocarpa PtpAffx.1615.2.S1_x_at CV282306 - - 2e-6 At1g60950 FED A C.G. S.X.
0.41 3e-75 282 Triticum aestivum Ta.3916.2.S1_x_at CK213268 - - 4e-1 At1g10960 ATFD1 (FERREDOXIN 1) C.G. S.X.
0.08 6e-6 50 Vitis vinifera 1615927_s_at CB972155 hypothetical protein LOC100249080 - 3e-2 At1g60950 FED A C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage