Gene omics information

Query gene ID	Zm.15817.1.A1_at
Gene name	protein kinase catalytic domain
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.15817.1.A1_at	D87044.1	protein kinase catalytic domain	-	3e-8	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	S.X.	H.G.	Please select
0.86	96.3	Zm.5775.1.A1_at	AI649573	-	-	1e+1	At3g06600	unknown protein	S.X.	H.G.	Please select
0.79	92.8	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please select
0.72	88.6	Zm.1039.3.S1_at	AI677375	Hypothetical protein LOC100194359	-	3e+0	At4g18580	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	S.X.	H.G.	Please select
0.67	85.8	Zm.8632.1.A1_at	BM268513	-	-	5e+0	At3g55672	-	S.X.	H.G.	Please select
0.62	79.8	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	S.X.	H.G.	Please select
0.57	75.1	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.6	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.4	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.2	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	7e-137	484	Zm.15817.1.S1_x_at	D87044.1	protein kinase catalytic domain	-	1e-4	At4g38230	CPK26	C.G.	S.X.	Please select
1.00	7e-137	484	Zm.15817.1.S1_at	D87044.1	protein kinase catalytic domain	-	1e-4	At4g38230	CPK26	C.G.	S.X.	Please select
0.10	4e-64	242	Zm.6306.1.A1_a_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.10	4e-64	242	Zm.6306.1.A1_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.06	1e-5	48	Zm.873.1.S1_at	AW067411	-	-	3e-16	At4g38230	CPK26	C.G.	S.X.	Please select
0.02	3e-3	40	Zm.41.1.S1_at	AI600908	calcium dependent protein kinase1	-	1e-16	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.05	3e-3	40	Zm.15283.1.A1_at	CO532462	calcium-dependent protein kinase, isoform AK1	-	2e-16	At3g57530	CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)	C.G.	S.X.	Please select
0.06	3e-3	40	Zm.14134.1.A1_at	CK985750	CDPK-related protein kinase	-	1e-18	At3g50530	CRK (CDPK-related kinase)	C.G.	S.X.	Please select
0.02	1e-2	38	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-8	57	Arabidopsis thaliana	At5g04870	830366	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	A calcium-dependent protein kinase that can phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	4e-2	38	Glycine max	GmaAffx.41843.5.S1_at	BM891473	-	-	1e-14	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	C.G.	S.X.	Please select
0.20	2e-63	240	Hordeum vulgare	Contig6447_at	Contig6447	-	-	4e-15	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.19	1e-55	216	Oryza sativa	Os12g0169800	9640.m00650	-	Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)	2e-8	At4g09570	CPK4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-5	50	Populus trichocarpa	PtpAffx.212106.1.S1_at	pmrna23742	calcium dependent protein kinase 12	-	5e-33	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	8e-3	40	Triticum aestivum	Ta.4580.2.S1_a_at	BJ268280	calcium-dependent protein kinase	-	8e-14	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	C.G.	S.X.	Please select
0.14	2e-6	50	Vitis vinifera	1615122_at	CF214628	hypothetical protein LOC100249224	-	2e-115	At3g10660	CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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