Gene omics information

Query gene ID	Zm.15800.5.A1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.15800.5.A1_x_at	CA404204	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	S.X.	H.G.	Please select
0.86	96.3	Zm.6054.1.A1_at	AW497492	-	-	3e+0	At5g25490	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.14489.1.S1_at	BQ527929	MFS18 protein	-	1e+0	At5g67510	60S ribosomal protein L26 (RPL26B)	S.X.	H.G.	Please select
0.71	88.2	Zm.4369.2.S1_at	CF016250	-	-	5e+0	At2g37590	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.14400.1.S1_at	AW000473	hypothetical protein LOC100191706	-	8e-52	At4g02720	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.4371.1.A1_at	BG517913	hypothetical protein LOC100217272	-	3e-1	At5g22240	OFP10	S.X.	H.G.	Please select
0.50	65.7	Zm.5517.1.A1_at	BE051194	hypothetical protein LOC100273563	-	2e-1	At1g15740	leucine-rich repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	96.7	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.5	96.3	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.3	96.1	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.1	95.9	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.7	95.4	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.6	95.2	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.4	94.9	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.1	94.3	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.0	94.0	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	1356	Zm.15800.5.A1_at	CA404204	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please select
0.90	0	1356	Zm.15800.5.A1_a_at	CA404204	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please select
0.46	6e-178	623	Zm.15800.3.S1_at	CK370046	-	-	4e-13	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please select
0.31	2e-39	163	Zm.2572.1.A1_at	BG842171	-	-	4e+0	At5g10310	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.6804.1.A1_at	CA403463	hypothetical protein LOC100280289	-	2e-66	At2g34250	protein transport protein sec61, putative	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.6804.2.A1_at	CK347487	hypothetical protein LOC100217058	-	1e-38	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.3019.1.A1_at	CK368018	pollen-specific arabinogalacta protein BAN102	-	1e+0	At2g41905	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.2399.1.A1_at	AY108607.1	hypothetical protein LOC100216933	-	4e-4	At5g08450	-	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.396.1.A1_at	U85494.1	LON peptidase1	-	1e-53	At5g47040	LON2 (LON PROTEASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-5	52	Arabidopsis thaliana	At4g13780	827012	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-7	57	Glycine max	Gma.12051.1.S1_at	BE821648	-	-	5e-11	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please select
0.58	1e-58	226	Hordeum vulgare	Contig4933_at	Contig4933	-	-	7e-1	At4g33145	unknown protein	C.G.	S.X.	Please select
0.40	2e-125	450	Oryza sativa	Os06g0508700	AF040700.1	-	Probable methionyl-tRNA synthetase (EC 6.1.1.10)(Methionine--tRNA ligase) (MetRS)	2e-55	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-3	44	Populus trichocarpa	PtpAffx.153514.1.A1_at	CV254624	-	-	2e-6	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	6e-66	252	Triticum aestivum	Ta.25332.1.S1_at	CK208267	-	-	8e-30	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please select
0.04	3e-6	52	Vitis vinifera	1610107_at	CF209518	hypothetical protein LOC100257273	-	1e-7	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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