Gene omics information

Query gene ID	Zm.15780.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	S.X.	H.G.	Please select
0.80	94.0	Zm.9088.1.A1_at	CB350848	-	-	1e+0	At2g06908	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.8383.1.A1_at	BM078678	PCO062666 protein	-	4e-1	At5g47960	ATRABA4C	S.X.	H.G.	Please select
0.67	85.8	Zm.12152.1.S1_at	CK394699	hypothetical protein LOC100274505	-	1e-5	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	S.X.	H.G.	Please select
0.67	85.8	Zm.15448.1.S1_at	CD448349	plastidic phosphate translocator-like protein1	-	4e-24	At4g32390	phosphate translocator-related	S.X.	H.G.	Please select
0.39	45.6	Zm.652.1.S1_at	AY029559.1	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	2e-77	287	Zm.10357.1.S1_at	T18725	senescence-associated-like protein	-	4e-4	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.03	5e-4	44	Zm.3466.1.A1_at	BE640414	zinc ion binding protein	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.5867.1.A1_at	AY103673.1	hypothetical protein LOC100191614	-	5e-89	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.02	7e+0	30	ZmAffx.14.1.S1_at	AF536189.1	-	-	1e-8	Atmg01080	-	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.9277.1.S1_at	AY105731.1	hypothetical protein LOC100193622	-	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.9370.1.A1_at	BM340838	-	-	5e+0	At2g02795	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.7015.1.S1_at	CO522815	-	-	5e-8	At5g46030	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.6836.1.A1_at	AI065428	-	-	5e+0	At3g61260	DNA-binding family protein / remorin family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.6214.2.A1_at	BQ279943	hypothetical protein LOC100273730	-	1e-7	At1g01230	ORMDL family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At3g01472	6241489	CPuORF33 (Conserved peptide upstream open reading frame 33)	Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF33 represents a conserved upstream opening reading frame relative to major ORF AT3G01470.1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	36	Glycine max	GmaAffx.22418.1.S1_at	BU091004	-	-	4e-11	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.27	2e-34	145	Hordeum vulgare	Contig15605_at	Contig15605	-	-	3e-8	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.11	4e-23	109	Oryza sativa	Os07g0616900	AK071047.1	-	Protein of unknown function DUF500 family protein	2e-8	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.71457.1.S1_at	BI124097	-	-	2e-1	At4g14020	rapid alkalinization factor (RALF) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	6e-27	121	Triticum aestivum	Ta.4047.1.S1_at	CD894015	-	-	1e-4	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please select
0.06	2e-2	38	Vitis vinifera	1608178_s_at	CF210114	hypothetical protein LOC100242383	-	5e-19	At3g43230	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage