Gene omics information

Query gene ID	Zm.15626.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	S.X.	H.G.	Please select
0.83	95.6	Zm.7720.1.S1_at	CK347322	-	-	2e-10	At2g21630	transport protein, putative	S.X.	H.G.	Please select
0.77	92.1	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	S.X.	H.G.	Please select
0.77	92.1	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	S.X.	H.G.	Please select
0.73	89.9	Zm.12573.1.A1_a_at	BI233467	hypothetical protein LOC100192765 /// hypothetical protein LOC100276406	-	2e+0	At3g20450	-	S.X.	H.G.	Please select
0.67	85.8	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.1	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.7	97.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.2	96.9	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	1324	Zm.2128.1.S1_at	AY105930.1	hypothetical protein LOC100216750	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.26	3e-25	115	Zm.5237.1.A1_at	AY107290.1	hypothetical protein LOC100273890	-	2e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.04	3e-1	36	ZmAffx.49.1.A1_at	AI664982	-	-	3e+0	At5g09570	-	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.49.1.S1_at	AI664982	-	-	3e+0	At5g09570	-	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.9278.1.A1_at	BM348240	-	-	1e+0	At3g22530	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3869.1.A1_at	CA399747	protein YIF1A	-	3e-21	At1g30890	integral membrane HRF1 family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.1350.1.S1_at	AW400059	-	-	2e-1	At5g56325	-	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6687.1.A1_at	AW438093	phosphoribulokinase	-	3e-31	At1g32060	PRK (PHOSPHORIBULOKINASE)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6177.1.S1_at	CF010170	IDP688 protein	-	5e-8	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	1e-8	61	Arabidopsis thaliana	At5g66510	836783	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	1e-49	198	Glycine max	Gma.2150.1.S1_at	CD401414	-	-	3e-21	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.52	0	634	Hordeum vulgare	Contig3102_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.60	8e-150	531	Oryza sativa	Os01g0283100	AK071713.1	-	Ferripyochelin-binding protein-like	1e-35	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	6e-45	182	Populus trichocarpa	PtpAffx.46654.1.S1_at	BU889616	hypothetical protein	-	3e-95	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	0	684	Triticum aestivum	TaAffx.59244.1.S1_at	CA605451	-	-	2e-14	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.46	4e-64	244	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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