Gene omics information

Query gene ID	Zm.15605.1.S1_at
Gene name	isopenicillin N epimerase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.15605.1.S1_at	CA402349	isopenicillin N epimerase	-	2e-2	At3g62130	epimerase-related	S.X.	H.G.	Please select
0.43	52.8	Zm.280.1.A1_at	U58208.1	Binding protein homolog1	-	0	At5g42020	BIP2	S.X.	H.G.	Please select
0.36	41.3	Zm.19280.1.S1_at	CO524637	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	S.X.	H.G.	Please select
0.30	29.8	Zm.14120.1.S1_at	AY105834.1	-	-	7e-30	At1g71220	EBS1 (EMS-mutagenized bri1 suppressor 1)	S.X.	H.G.	Please select
0.19	12.8	Zm.15697.1.A1_at	CD441154	hypothetical protein LOC100191504	-	3e-2	At5g63150	unknown protein	S.X.	H.G.	Please select
0.14	7.7	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	96.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.2	96.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.9	93.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.4	92.2	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-2	40	Zm.11770.1.A1_at	BM380607	hypothetical protein LOC100191551	-	9e-5	At5g12010	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.4797.1.A1_at	AY103804.1	fibrillarin-2	-	8e-16	At5g52470	FIB1 (FIBRILLARIN 1)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.8680.1.A1_at	BM075162	hypothetical protein LOC100277231	-	1e-3	At1g70760	CRR23 ((chlororespiratory reduction 23)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.8283.1.S1_at	BM073508	hypothetical protein LOC100276098	-	7e-1	At3g21865	PEX22 (peroxin 22)	C.G.	S.X.	Please select
0.02	5e-1	36	Zm.7496.1.A1_at	BM078690	hypothetical protein LOC100191656	-	6e-3	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.1391.1.A1_at	BM079848	hypothetical protein LOC100278100	-	1e-1	At2g14835	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.8261.1.A1_at	BE050536	BCL-2 binding anthanogene-1	-	2e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7736.1.S1_at	AF019146.1	maize insect resistance2	-	4e-3	At2g34080	cysteine proteinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-2	42	Arabidopsis thaliana	At3g62130	825386	epimerase-related	F:pyridoxal phosphate binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFPAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-4	48	Glycine max	PsAffx.psHB023xJ06f_at	PsAffx.psHB023xJ06f	-	-	4e+0	At3g13630	unknown protein	C.G.	S.X.	Please select
0.08	5e-26	119	Hordeum vulgare	rbags12j06_s_at	rbags12j06	-	-	4e+0	At3g48880	F-box family protein	C.G.	S.X.	Please select
0.48	0	779	Oryza sativa	Os01g0290100	AK069735.1	-	-	5e-6	At3g62130	epimerase-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-3	46	Populus trichocarpa	PtpAffx.159657.1.A1_at	CV264120	hypothetical protein	-	4e-35	At5g26600	catalytic/ pyridoxal phosphate binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	4e-68	260	Triticum aestivum	Ta.27987.1.S1_a_at	CD927641	-	-	2e+0	At2g01100	unknown protein	C.G.	S.X.	Please select
0.01	9e-2	38	Vitis vinifera	1613832_at	CA809303	hypothetical protein LOC100243698	-	5e-4	At2g23290	AtMYB70 (myb domain protein 70)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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