Gene omics information

Query gene ID	Zm.15576.1.A1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.41	49.7	Zm.15576.1.A1_a_at	CK827910	-	-	3e-1	At5g01860	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.749.1.S1_at	AY291061.1	photosystem II subunit PsbS1	-	8e-7	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	S.X.	H.G.	Please select
0.72	88.6	Zm.17497.1.A1_at	BG266429	hypothetical protein LOC100273930	-	3e+0	Atmg00140	-	S.X.	H.G.	Please select
0.60	77.8	Zm.6049.1.A1_at	AY103705.1	-	-	1e-1	At5g02400	PLL2	S.X.	H.G.	Please select
0.60	77.8	Zm.6049.3.A1_a_at	AI734480	phosphatidylinositol transporter/ transporter	-	3e-3	At1g76640	calmodulin-related protein, putative	S.X.	H.G.	Please select
0.57	75.1	Zm.2258.1.A1_at	AY112615.1	-	-	1e+0	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	S.X.	H.G.	Please select
0.50	65.7	Zm.2134.1.A1_at	AI734434	-	-	9e-2	At2g41780	unknown protein	S.X.	H.G.	Please select
0.49	61.9	Zm.18446.1.A1_at	CO518758	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please select
0.44	55.7	Zm.18416.1.A1_at	CO524449	hypothetical protein LOC100193203	-	3e-1	At3g27900	unknown protein	S.X.	H.G.	Please select
0.37	42.3	Zm.13681.1.S1_at	AY106895.1	hypothetical protein LOC100191679	-	4e-10	At1g12370	PHR1 (PHOTOLYASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.6	99.3	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	973	Zm.15576.1.A1_x_at	CK827910	-	-	3e-1	At5g01860	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.17272.1.S1_at	CK371238	-	-	8e-6	At2g41190	amino acid transporter family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.17952.1.A1_at	CF632730	-	-	6e+0	At4g13150	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.17999.1.A1_at	AY105553.1	adenylate kinase	-	3e-3	At2g39270	adenylate kinase family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.16645.1.S1_at	CF648747	hypothetical protein LOC100191852	-	1e-11	At1g56720	protein kinase family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.13443.2.A1_at	CK368379	-	-	5e+0	At5g42860	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.13443.2.S1_at	CK368379	hypothetical protein LOC100276461	-	5e+0	At5g42860	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.8992.2.A1_a_at	AW066740	hypothetical protein LOC100191900 /// glyceraldehyde-3-phosphate dehydrogenase, cytosolic	-	2e-25	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.8992.2.A1_at	AW066740	hypothetical protein LOC100191900	-	2e-25	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At5g01860	831739	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	GmaAffx.15890.1.S1_at	AI441065	-	-	6e-2	At4g24290	-	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	Contig23472_at	Contig23472	-	-	1e+1	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	C.G.	S.X.	Please select
0.03	4e-2	40	Oryza sativa	Os10g0410200	NM_196449.1	-	Protein of unknown function DUF635 family protein	5e-4	At2g13770	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.211679.1.S1_s_at	pmrna22894	hypothetical protein	-	5e-5	At1g67900	phototropic-responsive NPH3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+1	30	Triticum aestivum	TaAffx.112041.1.S1_at	CA627614	-	-	6e-1	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613246_at	CB339467	-	-	2e+0	At2g43871	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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