Gene omics information

Query gene ID	Zm.15524.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.15524.1.A1_at	CF632238	-	-	4e-1	At5g46780	VQ motif-containing protein	S.X.	H.G.	Please select
0.91	99.0	Zm.3892.8.S1_a_at	CA404367	Elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.80	94.0	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.63	81.1	Zm.2901.1.A1_at	BM351614	hypothetical protein LOC100277716	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	S.X.	H.G.	Please select
0.63	81.1	Zm.3583.2.A1_a_at	AY105229.1	hypothetical protein LOC100191673	-	2e+0	At4g30600	signal recognition particle receptor alpha subunit family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.11783.1.A1_at	BM380733	hypothetical protein LOC100191487	-	4e+0	At5g42510	disease resistance-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.7	96.5	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-2	38	Zm.11136.1.A1_at	CK370100	hypothetical protein LOC100277998	-	1e-1	At4g39710	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.9973.1.A1_at	BM350441	-	-	2e+0	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.283.1.A1_at	AI670414	-	-	3e+0	At3g23175	lesion inducing protein-related	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.283.1.S1_at	AI670414	-	-	3e+0	At3g23175	lesion inducing protein-related	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.6265.1.A1_at	BG266135	knotted1	-	6e-8	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.271.1.S1_at	L44133.1	rough sheath1	-	4e-15	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.1945.2.A1_a_at	AY106325.1	Rho-related protein from plants 2 /// Rho-related protein from plants 9	-	3e-46	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.15819.1.A1_at	AY163377.1	Rho-related protein from plants 9	-	3e-46	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.13005.1.S1_at	CD443746	calmodulin-like protein 1	-	1e-1	At5g52960	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At5g46780	834721	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-3	44	Glycine max	GmaAffx.91087.1.S1_at	CF806812	Clone pSC8a endo-1,4-beta-glucanase (cel8)	-	3e-7	At4g11050	AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3)	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os11g0125100	9639.m00225	-	-	1e-2	At5g42780	AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.47156.1.S1_at	BU835172	hypothetical protein	-	2e-1	At3g48480	cysteine-type peptidase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.111943.1.S1_at	CA629916	-	-	3e-4	At3g13227	serine-rich protein-related	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1618241_at	CF513295	hypothetical protein LOC100252311	-	6e-28	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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