Gene omics information

Query gene ID	Zm.1551.1.A1_at
Gene name	peptidyl-prolyl cis-trans isomerase 1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.1551.1.A1_at	BM339714	peptidyl-prolyl cis-trans isomerase 1	-	6e-3	At2g18040	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	S.X.	H.G.	Please select
0.61	79.5	Zm.16994.2.A1_a_at	CF972506	methionine synthase	-	2e-82	At5g17920	ATMS1	S.X.	H.G.	Please select
0.57	75.1	Zm.3747.1.S1_at	BM267525	-	-	3e-1	At2g42930	glycosyl hydrolase family protein 17	S.X.	H.G.	Please select
0.56	74.4	Zm.15510.1.A1_at	CD441066	mitochondrial carrier YMR166C	-	2e-7	At1g74240	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.8484.1.A1_at	CD974829	hypothetical protein LOC100279952	-	9e-2	At5g42100	ATBG_PAP	S.X.	H.G.	Please select
0.26	22.7	Zm.5954.1.A1_at	AF464905.1	repressor protein	-	1e-11	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.1	95.9	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.2	94.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	34	Zm.4165.1.A1_at	AB018744.1	phosphoenolpyruvate carboxykinase	-	1e-25	At4g37870	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.18117.1.S1_at	CN844859	hypothetical protein LOC100191821	-	1e-2	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.17294.1.S1_at	CD219156	-	-	3e-5	At4g34240	ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9311.2.A1_x_at	CB350735	hypothetical protein LOC100274965	-	5e+0	At3g17860	JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8180.1.S1_at	CF006239	Starch synthase isoform zSTSII-1	-	8e-18	At3g01180	AtSS2 (starch synthase 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.631.1.S1_at	AF079428.1	recombination protein51 gene a	-	3e-74	At5g20850	ATRAD51	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5372.1.S1_at	AW000380	secondary cell wall-related glycosyltransferase family 8	-	5e-15	At3g18660	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4183.1.A1_at	AI857198	-	-	4e-1	At4g03113	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	6e-3	42	Arabidopsis thaliana	At2g18040	816316	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	9e-12	71	Glycine max	PsAffx.CL1523Contig1_at	PsAffx.CL1523Contig1	-	-	4e+0	At4g03270	CYCD6	C.G.	S.X.	Please select
0.41	5e-85	313	Hordeum vulgare	Contig10671_at	Contig10671	-	-	4e-1	At5g64160	unknown protein	C.G.	S.X.	Please select
0.47	2e-100	367	Oryza sativa	Os04g0118500	9632.m00190	-	Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8)(Rotamase Pin1) (PPIase Pin1) (DlPar13)	3e-1	At5g64160	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-9	63	Populus trichocarpa	Ptp.5417.2.S1_at	CV282397	hypothetical protein	-	4e-13	At2g18040	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	646	Triticum aestivum	TaAffx.30358.1.S1_at	CA625924	-	-	3e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	C.G.	S.X.	Please select
0.07	1e-10	65	Vitis vinifera	1619445_s_at	BQ794338	hypothetical protein LOC100242075	-	5e-1	At4g32260	ATP synthase family	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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