Gene omics information

Query gene ID	Zm.15414.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.15414.1.A1_at	CD435566	-	-	5e+0	At4g01170	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.15437.1.S1_at	CD219447	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please select
0.35	38.9	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.18465.1.A1_at	CO530071	-	-	1e+1	At4g09100	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.1782.1.A1_at	BQ538858	hypothetical protein LOC100273445	-	2e+0	At5g60970	TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	97.4	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.6	97.1	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.6	96.4	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.4	96.2	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206296	Lower pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.9	95.7	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Zm.14176.1.A1_at	CO532657	hypothetical protein LOC100192074	-	4e-8	At5g26210	AL4 (ALFIN-LIKE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5542.1.S1_at	CO518213	Hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5547.1.A1_at	AW453095	hypothetical protein LOC100193242	-	5e-11	At1g14560	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5542.1.A1_at	AI622571	hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5498.1.A1_at	AY106013.1	hypothetical protein LOC100194112	-	1e-41	At5g35530	40S ribosomal protein S3 (RPS3C)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5498.1.S1_at	AY106013.1	Hypothetical protein LOC100194112	-	1e-41	At5g35530	40S ribosomal protein S3 (RPS3C)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3191.1.A1_at	BM337305	ribosomal protein L36 containing protein	-	2e+0	At5g41570	WRKY24	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.9986.1.S1_at	BM350777	-	-	5e+0	At4g34790	auxin-responsive family protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.8179.1.A1_at	CO534834	hypothetical protein LOC100191267	-	1e-8	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At4g01170	826561	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.61545.1.S1_at	AI416848	-	-	5e-11	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	C.G.	S.X.	Please select
0.03	9e+0	30	Hordeum vulgare	HV14K13u_at	HV14K13u	-	-	3e-3	At5g07910	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os.24970.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.22899.1.A1_s_at	BP935940	hypothetical protein	-	3e-4	At4g17900	zinc-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.92495.1.A1_at	BJ262685	-	-	3e+0	At3g51140	-	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1620995_at	CF512105	similar to kinesin motor protein-related	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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