Gene omics information

Query gene ID	Zm.15406.1.A1_at
Gene name	hypothetical protein LOC100191191
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.15406.1.A1_at	AI737751	hypothetical protein LOC100191191	-	1e-4	At2g25670	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.18819.1.S1_at	CO522421	hypothetical protein LOC100193533	-	1e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	S.X.	H.G.	Please select
0.53	69.1	Zm.13704.1.A1_at	AY106627.1	-	-	2e-23	At2g19490	recA family protein	S.X.	H.G.	Please select
0.26	22.7	ZmAffx.563.1.S1_at	AI714606	-	-	3e+0	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	S.X.	H.G.	Please select
0.22	16.9	Zm.6555.1.A1_at	AY110393.1	-	-	3e+0	At5g22880	HTB2	S.X.	H.G.	Please select
0.21	15.5	Zm.9975.1.A1_at	BM074697	-	-	7e-6	At5g64200	ATSC35	S.X.	H.G.	Please select
0.17	10.6	Zm.6863.2.A1_at	CF637783	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	1e-94	345	Zm.6136.1.A1_at	BM074048	early fruit mRNA	-	2e-7	At4g32610	unknown protein	C.G.	S.X.	Please select
0.30	5e-36	151	ZmAffx.1168.1.S1_s_at	AW600602	early fruit mRNA	-	2e-1	At5g16380	unknown protein	C.G.	S.X.	Please select
0.19	5e-36	151	ZmAffx.1168.1.A1_at	AW600602	-	-	2e-1	At5g16380	unknown protein	C.G.	S.X.	Please select
0.13	1e-14	79	Zm.9519.1.A1_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.13	1e-14	79	Zm.9519.1.A1_a_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.05	8e-4	44	Zm.9728.1.A1_at	BM350445	-	-	6e+0	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.17572.1.A1_at	BM269508	-	-	1e-10	At5g46020	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.90.1.A1_a_at	AF004210.1	-	-	4e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-4	48	Arabidopsis thaliana	At2g25670	817108	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	3e-3	44	Glycine max	Gma.17762.1.S1_at	BF596566	-	-	3e-2	At2g25670	unknown protein	C.G.	S.X.	Please select
0.31	1e-24	113	Hordeum vulgare	Contig9587_at	Contig9587	-	-	2e-10	At2g25670	unknown protein	C.G.	S.X.	Please select
0.33	1e-39	165	Oryza sativa	Os01g0179300	NM_189536.1	-	Conserved hypothetical protein	1e-2	At2g25670	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-13	77	Populus trichocarpa	PtpAffx.8035.2.A1_at	BU897211	hypothetical protein	-	4e-17	At2g25670	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	6e-25	115	Triticum aestivum	Ta.3168.1.S1_at	CD868850	-	-	4e-5	At2g25670	unknown protein	C.G.	S.X.	Please select
0.06	9e-9	59	Vitis vinifera	1618905_at	CB339532	hypothetical protein LOC100245830	-	5e-7	At2g25670	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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