Gene omics information

Query gene ID	Zm.15390.1.A1_at
Gene name	hypothetical protein LOC100280068
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.15390.1.A1_at	BM267333	hypothetical protein LOC100280068	-	4e-7	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.16969.1.A1_at	CF972346	developmentally-regulated GTP-binding protein 2	-	2e-56	At1g17470	ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1)	S.X.	H.G.	Please select
0.13	6.8	Zm.19201.2.S1_a_at	CO526388	hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	S.X.	H.G.	Please select
0.11	5.3	Zm.12878.1.S1_at	CA400963	-	-	9e-3	At5g11560	catalytic	S.X.	H.G.	Please select
0.10	4.6	Zm.12093.1.A1_at	BM349818	-	-	6e+0	At3g24100	-	S.X.	H.G.	Please select
0.03	1.1	Zm.2098.1.S1_at	AY105824.1	oleosin1	-	2e+0	At2g47780	rubber elongation factor (REF) protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	8e-7	54	Zm.10769.1.A1_at	CF624289	glutamate carboxypeptidase 2	-	2e+0	At2g18890	protein kinase family protein	C.G.	S.X.	Please select
0.03	5e-2	38	ZmAffx.1412.1.S1_at	40794996-87	-	-	2e-139	At2g07751	NADH-ubiquinone oxidoreductase chain 3, putative	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.5428.1.S1_at	AI855040	ubiquitin-like 1-activating enzyme E1A	-	8e-1	At4g24940	SAE1A (SUMO-ACTIVATING ENZYME 1A)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.12589.1.S1_a_at	AY389497.1	hypothetical protein LOC100193645 /// ribosomal protein S6 kinase	-	4e-12	At3g08720	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.5385.1.A1_at	CF035957	hypothetical protein LOC100216766	-	5e-1	At5g14210	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.2540.1.A1_at	AY105941.1	spermidine synthase	-	2e-3	At1g23820	SPDS1 (spermidine synthase 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5703.1.A1_at	CF631931	sterol-8,7-isomerase	-	1e-1	At1g20050	HYD1 (HYDRA1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.16990.1.S1_at	CF972615	-	-	5e-3	At1g19220	ARF19 (AUXIN RESPONSE FACTOR 19)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.10635.1.S1_at	AY107243.1	-	-	8e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-7	56	Arabidopsis thaliana	At5g19740	832094	peptidase M28 family protein	F:dipeptidase activity;P:proteolysis;C:vacuole;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	36	Glycine max	GmaAffx.48644.1.S1_at	AW620338	-	-	9e-13	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.34	3e-28	125	Hordeum vulgare	Contig13378_at	Contig13378	-	-	6e+0	At4g38430	ROPGEF1	C.G.	S.X.	Please select
0.44	1e-39	165	Oryza sativa	Os01g0743300	AK069026.1	-	Protease-associated PA domain containing protein	2e-2	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	6e-1	36	Populus trichocarpa	PtpAffx.22300.1.S1_at	CF228629	hypothetical protein	-	5e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	3e-42	173	Triticum aestivum	Ta.27238.1.S1_at	BT009569.1	-	-	3e-8	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1611536_at	CD802306	-	-	2e-1	At2g40110	yippee family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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