Gene omics information

Query gene ID	Zm.15379.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.15379.1.A1_at	BG842487	-	-	5e+0	At2g30424	TCL2 (TRICHOMELESS 2)	S.X.	H.G.	Please select
0.70	87.0	Zm.9334.1.A1_at	BM268129	-	-	2e+1	At5g28642	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.1120.1.A1_at	AY112024.1	-	-	1e+0	At2g38185	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9930.1.A1_at	BM333380	-	-	1e+0	At5g37770	TCH2 (TOUCH 2)	S.X.	H.G.	Please select
0.49	61.9	Zm.14617.1.A1_at	BM080453	Hypothetical protein LOC100191188	-	2e+0	At2g33130	RALFL18 (ralf-like 18)	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.71.1.S1_at	AI665169	-	-	3e+0	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	S.X.	H.G.	Please select
0.47	59.9	Zm.6961.1.A1_at	AY104000.1	hypothetical protein LOC100191822	-	3e-18	At3g03340	UNE6 (unfertilized embryo sac 6)	S.X.	H.G.	Please select
0.45	56.4	Zm.155.1.A1_a_at	AI667827	brittle endosperm1	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.45	56.4	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	S.X.	H.G.	Please select
0.45	56.4	Zm.13658.1.A1_at	AY107148.1	hypothetical protein LOC100193262	-	1e+0	At3g50350	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-7	56	Zm.5734.1.A1_at	AI637160	hypothetical protein LOC100279919	-	3e-31	At2g42880	ATMPK20	C.G.	S.X.	Please select
0.05	3e-2	38	Zm.9383.1.A1_at	BM268466	-	-	8e+0	At3g44935	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.16180.1.A1_at	AW091200	-	-	5e-2	At2g28440	proline-rich family protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.940.1.S1_at	AI820350	hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.940.1.A1_at	AI820350	Hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.6196.2.S1_at	AI677134	-	-	3e+0	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6196.1.A1_a_at	BG265419	hypothetical protein LOC100279988	-	7e-1	At4g35880	aspartyl protease family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4922.1.A1_at	AI586404	-	-	7e-1	At5g09290	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At2g30424	6240858	TCL2 (TRICHOMELESS 2)	In a tandem repeat with AT2g30432 (TCL1) and AT2g30420 (ETC2)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.60421.1.S1_at	BQ081272	-	-	1e-18	At1g77130	PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2)	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	HX08J20r_s_at	HX08J20r	-	-	2e+0	At4g15920	-	C.G.	S.X.	Please select
0.14	8e-28	125	Oryza sativa	Os05g0566400	AK100389.1	-	Blast and wounding induced mitogen-activatedprotein kinase	2e-36	At3g14720	ATMPK19	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.202004.1.S1_at	pmrna3997	hypothetical protein	-	7e-15	At3g49720	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	0	714	Triticum aestivum	Ta.27522.1.S1_at	BT009175.1	-	-	7e+0	At2g30424	TCL2 (TRICHOMELESS 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622648_at	CB002065	-	-	1e+0	At4g03940	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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