Gene omics information

Query gene ID	Zm.15359.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	88.6	Zm.15359.1.S1_at	CO531510	-	-	2e+0	At2g05260	lipase class 3 family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.56	74.4	Zm.17990.1.S1_at	BG837629	hypothetical protein LOC100275286	-	2e+0	At5g54460	wound-responsive protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.48	61.3	Zm.9975.1.A1_at	BM074697	-	-	7e-6	At5g64200	ATSC35	S.X.	H.G.	Please select
0.47	59.9	Zm.2478.1.A1_at	AY109826.1	-	-	4e-1	At2g01630	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.6555.1.A1_at	AY110393.1	-	-	3e+0	At5g22880	HTB2	S.X.	H.G.	Please select
0.42	51.3	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.17192.1.A1_at	BM339467	-	-	5e+0	At2g22520	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.9	100.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
26.3	99.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
25.1	99.6	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
19.7	99.3	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
18.2	99.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
17.6	99.1	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
17.1	99.1	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
14.8	98.9	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
14.6	98.9	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.0	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-14	79	Zm.9377.1.A1_at	AY109233.1	hypothetical protein LOC100275736	-	4e-1	At3g10610	40S ribosomal protein S17 (RPS17C)	C.G.	S.X.	Please select
0.04	4e-3	42	Zm.2190.1.A1_at	BG841211	hypothetical protein LOC100276270	-	6e+0	At5g05930	guanylyl cyclase-related (GC1)	C.G.	S.X.	Please select
0.01	1e-2	40	Zm.9764.1.A1_at	CO526069	-	-	8e-1	At5g19790	RAP2.11 (related to AP2 11)	C.G.	S.X.	Please select
0.01	1e-2	40	Zm.15778.1.A1_at	CD448252	hypothetical protein LOC100216752	-	2e-1	At2g38660	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.4905.1.S1_at	AY106392.1	hypothetical protein LOC100272547	-	1e-14	At4g27120	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.17808.1.S1_at	CK371597	protein Kinase-like protein TMKL1	-	4e-1	At3g55880	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.16189.3.A1_at	CD484948	hypothetical protein LOC100276118	-	4e-1	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.16189.3.S1_at	CD484948	-	-	4e-1	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.15970.1.A1_at	AW438052	MARD1	-	3e+0	At3g03930	protein kinase-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g05260	815074	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	HgAffx.15419.1.S1_at	CB281575	-	-	4e+0	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please select
0.09	3e-10	65	Hordeum vulgare	Contig25076_at	Contig25076	-	-	1e+0	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	C.G.	S.X.	Please select
0.04	1e-3	46	Oryza sativa	Os.20233.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.4889.1.A1_s_at	BU825715	hypothetical protein	-	2e+0	At4g18975	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-7	57	Triticum aestivum	Ta.12012.1.S1_at	BQ171265	-	-	1e+0	At5g50175	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1620792_at	CF605390	hypothetical protein LOC100242276	-	3e-1	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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