Gene omics information

Query gene ID	Zm.15348.1.A1_x_at
Gene name	proline oxidase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.15348.1.A1_x_at	CF637051	proline oxidase	-	6e-1	At2g20619	-	S.X.	H.G.	Please select
0.55	71.6	Zm.354.2.S1_a_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	S.X.	H.G.	Please select
0.43	52.8	Zm.15903.3.A1_at	AY104679.1	hypothetical protein LOC100273579	-	4e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please select
0.15	8.6	Zm.11871.1.A1_at	BM381412	-	-	1e+0	At5g55140	ribosomal protein L30 family protein	S.X.	H.G.	Please select
0.13	6.8	Zm.31.3.S1_a_at	CD446711	16-kDa zein protein	-	6e-1	At5g15560	unknown protein	S.X.	H.G.	Please select
0.07	2.9	Zm.359.1.S1_at	U82481.1	kinase interacting kinase1	-	2e-6	At3g16030	CES101 (CALLUS EXPRESSION OF RBCS 101)	S.X.	H.G.	Please select
0.03	1.1	Zm.1444.2.A1_at	BE055973	-	-	8e-1	At5g10860	CBS domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.7	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	1e-169	595	Zm.15348.2.A1_x_at	CB885924	proline oxidase	-	5e+0	At4g29820	CFIM-25	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.3184.1.A1_at	AY105651.1	gibberellin 20-oxidase	-	5e-2	At5g07200	YAP169	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.2458.1.S1_at	CA403461	hypothetical protein LOC100273658	-	3e-108	At5g62700	TUB3	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.8119.1.A1_at	AY110313.1	acetyltransferase	-	8e-5	At1g03650	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.8119.1.S1_at	AY110313.1	-	-	8e-5	At1g03650	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.1494.1.A1_at	BG842622	-	-	1e-2	At2g20825	ULT2 (ULTRAPETALA 2)	C.G.	S.X.	Please select
0.03	3e-1	36	Zm.1494.1.S1_at	AY105986.1	hypothetical protein LOC100279492	-	1e-2	At2g20825	ULT2 (ULTRAPETALA 2)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.1416.1.S1_at	CK787234	mitochondrial 2-oxoglutarate/malate carrier protein	-	1e-2	At5g09470	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.7869.1.A1_at	BM080228	calmodulin binding protein	-	2e+1	At5g26731	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	36	Arabidopsis thaliana	At2g20619	5007892	-	Encodes a Plant thionin family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	PsAffx.C28000050_at	PsAffx.C28000050	-	-	1e+0	At2g35010	ATO1 (Arabidopsis thioredoxin O1)	C.G.	S.X.	Please select
0.35	5e-120	430	Hordeum vulgare	Contig68_at	Contig68	-	-	6e+0	At2g20690	lumazine-binding family protein	C.G.	S.X.	Please select
0.56	4e-124	446	Oryza sativa	Os10g0550900	AK121010.1	-	Proline dehydrogenase domain containing protein	9e-1	At4g18620	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Populus trichocarpa	PtpAffx.217647.1.S1_at	pmrna32997	hypothetical protein	-	2e+1	At2g14110	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	2e-115	416	Triticum aestivum	Ta.3696.3.S1_a_at	CA647018	-	-	2e+1	At5g64590	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1616547_at	BQ798895	hypothetical protein LOC100256265	-	5e-21	At5g23230	NIC2 (NICOTINAMIDASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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