Gene omics information

Query gene ID	Zm.15314.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.15314.1.S1_at	CF972544	-	-	1e-11	At3g06080	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4230.1.S1_at	CO523811	-	-	4e-5	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.836.1.A1_at	AI770581	-	-	2e-1	At3g24350	SYP32 (SYNTAXIN OF PLANTS 32)	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	S.X.	H.G.	Please select
0.24	19.8	Zm.11935.1.A1_at	BM381982	-	-	6e-1	At1g25420	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.4	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.5	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	6e-18	91	Zm.16517.1.A1_at	CO534088	-	-	1e+0	At2g05430	unknown protein	C.G.	S.X.	Please select
0.04	6e-12	71	Zm.16573.2.A1_at	CF623695	hypothetical protein LOC100275749	-	1e-3	At1g78710	unknown protein	C.G.	S.X.	Please select
0.03	8e-8	57	Zm.16573.1.A1_at	CA398704	-	-	2e+0	At1g78710	unknown protein	C.G.	S.X.	Please select
0.03	8e-5	48	Zm.2481.1.A1_at	BM074368	hypothetical protein LOC100273728	-	9e-3	At5g06700	unknown protein	C.G.	S.X.	Please select
0.03	8e-2	38	Zm.19361.1.A1_at	CO534290	hypothetical protein LOC100273777	-	2e-6	At5g64470	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.822.1.A1_x_at	CO526761	-	-	2e+0	At5g60490	FLA12	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.822.1.A1_at	CO526761	-	-	2e+0	At5g60490	FLA12	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.822.1.S1_at	CO526761	meiosis 5	-	2e+0	At5g60490	FLA12	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.6150.1.A1_at	CF635417	nucleic acid binding protein	-	2e-1	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-11	71	Arabidopsis thaliana	At3g06080	819781	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-6	54	Glycine max	GmaAffx.35475.1.S1_at	AW423408	-	-	2e-7	At5g19160	unknown protein	C.G.	S.X.	Please select
0.15	6e-9	61	Hordeum vulgare	HT12J02u_at	HT12J02u	-	-	1e+0	At5g19160	unknown protein	C.G.	S.X.	Please select
0.45	1e-111	404	Oryza sativa	Os11g0148200	9639.m00425	-	Protein of unknown function DUF231 domaincontaining protein	3e-6	At5g19160	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-7	57	Populus trichocarpa	PtpAffx.158052.1.A1_at	DN488533	hypothetical protein	-	2e-8	At3g06080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	2e-29	131	Triticum aestivum	TaAffx.121172.1.S1_at	BG909448	-	-	5e-1	At1g72600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.05	2e-13	75	Vitis vinifera	1611799_at	CB982194	hypothetical protein LOC100255639	-	4e-4	At5g06700	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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