Gene omics information

Query gene ID	Zm.15307.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	86.5	Zm.15307.1.A1_at	CF014037	-	-	2e-11	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	S.X.	H.G.	Please select
0.41	49.7	Zm.1010.1.A1_at	U85495.1	LON2 protein	-	4e-20	At5g26860	LON1 (LON PROTEASE 1)	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.1147.1.A1_at	AW400224	-	-	6e-1	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.767.1.A1_at	AI746090	hypothetical protein LOC100273842	-	3e+0	At4g18090	unknown protein	S.X.	H.G.	Please select
0.34	37.2	ZmAffx.783.1.A1_s_at	AI745854	nucleolin	-	8e-7	At1g51730	RWD domain-containing protein	S.X.	H.G.	Please select
0.34	37.2	ZmAffx.524.1.A1_at	AI711679	-	-	1e+1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	S.X.	H.G.	Please select
0.28	28.1	ZmAffx.1184.1.A1_at	AW927978	-	-	1e-2	At2g38640	unknown protein	S.X.	H.G.	Please select
0.27	24.6	ZmAffx.809.1.A1_at	AI770393	-	-	4e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	S.X.	H.G.	Please select
0.27	24.6	ZmAffx.800.1.A1_at	AI770361	-	-	2e-4	At3g58580	hydrolase	S.X.	H.G.	Please select
0.25	21.3	ZmAffx.285.1.S1_at	AI670418	-	-	1e+1	At5g57270	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.5	99.6	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
23.2	99.5	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
20.8	99.4	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
16.6	99.1	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
15.5	99.0	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
15.2	98.9	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
14.4	98.9	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
13.5	98.8	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.2	98.4	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
9.7	98.3	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	0	668	Zm.13403.1.A1_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.34	0	668	Zm.13403.1.S1_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.34	0	668	Zm.13403.1.S1_x_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.26	2e-173	609	Zm.17174.1.A1_at	CO531239	hypothetical protein LOC100273979	-	2e-6	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.26	1e-165	583	Zm.375.1.S1_at	AF057184.1	trypsin inhibitor	-	1e-1	At5g02440	unknown protein	C.G.	S.X.	Please select
0.12	1e-51	204	Zm.13228.1.S1_at	CA452580	LHT1	-	5e+0	At4g17585	unknown protein	C.G.	S.X.	Please select
0.16	6e-50	198	Zm.6656.1.A1_at	AI374527	Bowman-Birk type bran trypsin inhibitor	-	5e-1	At1g01840	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.6891.1.S1_at	AI065574	-	-	9e-1	At2g43050	ATPMEPCRD	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.17662.1.S1_at	CO530536	-	-	5e-5	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-11	71	Arabidopsis thaliana	At1g24400	839057	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-12	75	Glycine max	GmaAffx.48461.1.S1_at	AW396191	-	-	4e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.08	1e-11	71	Hordeum vulgare	Contig15915_at	Contig15915	-	-	2e-3	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.48	0	668	Oryza sativa	Os08g0127100	AK065217.1	-	Lysine and histidine specific transporter	3e-19	At5g40780	LHT1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	7e-3	44	Populus trichocarpa	PtpAffx.212850.1.S1_at	pmrna25146	lysine/histidine transporter	-	9e-28	At5g40780	LHT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	5e-173	609	Triticum aestivum	Ta.12339.1.S1_s_at	BT009250.1	-	-	5e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.07	7e-15	81	Vitis vinifera	1617470_s_at	BQ797931	similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter	-	6e-11	At1g48640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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