Gene omics information

Query gene ID	Zm.15242.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	S.X.	H.G.	Please select
0.46	58.4	Zm.12184.1.A1_at	BM380021	-	-	6e-10	At4g11960	PGRL1B (PGR5-Like B)	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.13228.1.S1_at	CA452580	LHT1	-	5e+0	At4g17585	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.127.3.A1_a_at	AI677333	octopine synthase binding factor1	-	6e+0	At5g04080	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.4	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
40.5	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.9	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	38	Zm.18276.1.A1_at	CO532399	dihydroneopterin aldolase	-	2e+0	At1g78800	glycosyl transferase family 1 protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.14962.1.A1_at	BM268018	hypothetical protein LOC100280285	-	2e-1	At3g59010	pectinesterase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.14170.1.A1_a_at	BG841910	hypothetical protein LOC100193006	-	5e-7	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.8514.1.A1_at	AY104758.1	PREG-like protein	-	5e+0	At5g35525	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.8514.1.S1_at	AY104758.1	-	-	5e+0	At5g35525	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.5300.1.A1_at	AI734564	-	-	5e-9	At5g01020	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4347.1.A1_at	CD434952	-	-	1e-2	At3g60340	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9834.1.A1_at	AY112139.1	-	-	2e+1	At5g28919	-	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9834.1.S1_at	AY112139.1	-	-	2e+1	At5g28919	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At3g16712	6240279	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.3215.1.A1_at	CK350336	-	-	1e+0	At1g57780	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig23603_at	Contig23603	-	-	8e-2	At5g40870	AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	OsAffx.30744.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.249.420.A1_at	CV262823	-	-	2e+0	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.105684.1.S1_at	CA730971	-	-	4e+0	At5g62210	embryo-specific protein-related	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1621613_at	CF207534	-	-	2e-2	At2g38740	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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