Gene omics information

Query gene ID	Zm.15215.1.A1_at
Gene name	Hypothetical protein LOC100193843
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.15215.1.A1_at	BM332652	Hypothetical protein LOC100193843	-	1e+0	At5g22870	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.5012.1.A1_at	CK849978	auxin response factor 75	-	9e-1	At3g45050	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.35	38.9	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.30	29.8	Zm.9542.1.A1_at	CF624708	hypothetical protein LOC100192045	-	3e-16	At4g16170	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.7	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	32	Zm.5818.1.A1_at	AY105653.1	-	-	4e-7	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.1742.1.S1_at	AW424599	UDP-glucose 4-epimerase GEPI48	-	6e-14	At4g10960	UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17199.1.A1_at	CK370582	hypothetical protein LOC100191930	-	2e-10	At3g27960	kinesin light chain-related	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.11647.1.A1_at	CO532634	hypothetical protein LOC100193107	-	3e-14	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.828.1.S1_at	AI770529	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.7334.1.S1_at	CD975420	kinesin-like protein16	-	2e-25	At5g41310	kinesin motor protein-related	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.6941.1.A1_at	CF638044	-	-	4e-1	At3g46770	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.19112.1.A1_at	CO517957	-	-	3e-4	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.18107.1.S1_at	AY536125.1	meg5 protein	-	3e-1	At5g22190	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g22870	832350	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.73707.1.S1_at	BM309589	-	-	3e+0	At5g04370	NAMT1	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	HV_CEb0016P15r2_at	HV_CEb0016P15r2	-	-	8e-2	At2g46100	unknown protein	C.G.	S.X.	Please select
0.05	1e-11	71	Oryza sativa	Os05g0587300	AK120811.1	-	Protein prenyltransferase domain containingprotein	4e-1	At1g53300	TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.37392.1.A1_at	CV254143	-	-	3e+0	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-12	73	Triticum aestivum	Ta.9684.1.S1_at	BJ231339	-	-	1e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1620225_s_at	CD798094	-	-	1e+0	At5g38720	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage