Gene omics information

Query gene ID	Zm.15106.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.15106.1.A1_at	AI065782	-	-	7e-1	At2g29360	tropinone reductase, putative / tropine dehydrogenase, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.7949.1.A1_at	BQ538368	hypothetical protein LOC100192737	-	2e+0	At2g28480	RNA binding	S.X.	H.G.	Please select
0.40	48.5	Zm.11379.1.A1_at	CB351163	-	-	5e+0	At2g29995	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.5502.1.A1_at	BM378399	hypothetical protein LOC100274214	-	1e-2	At1g14330	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.3630.2.S1_at	CO531431	36.4 kDa proline-rich protein	-	3e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	S.X.	H.G.	Please select
0.15	8.6	Zm.19034.1.S1_at	BQ833817	-	-	1e+1	At4g32900	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.4	99.9	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
30.4	99.8	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
29.1	99.8	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
12.9	98.7	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
12.5	98.7	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.6	97.9	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.5	97.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.3	97.8	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.0	97.7	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.2	96.9	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	3e-75	280	Zm.7925.1.A1_at	BM080435	-	-	1e+0	At1g58070	unknown protein	C.G.	S.X.	Please select
0.03	8e-2	36	Zm.2536.1.A1_at	CK347523	hypothetical protein LOC100216682	-	6e+0	At5g42960	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.6780.1.A1_a_at	CK370786	hypothetical protein LOC100274579	-	2e-60	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.6780.3.A1_x_at	AI833809	hypothetical protein LOC100274579	-	4e-12	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.6780.7.S1_a_at	AI833791	-	-	4e-12	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.519.1.S1_at	AI065908	cellulose synthase3	-	2e-113	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.5327.1.A1_at	CF041705	hypothetical protein LOC100194093	-	8e+0	At4g14358	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7080.1.A1_at	BM080239	hypothetical protein LOC100192783	-	2e-13	At1g57660	60S ribosomal protein L21 (RPL21E)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4578.2.S1_at	CO521260	hypothetical protein LOC100279630 /// MADS1	-	2e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	34	Arabidopsis thaliana	At2g29360	817485	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.44738.1.A1_at	BE804052	-	-	2e-4	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	Contig664_x_at	Contig664	-	-	1e+1	At5g47170	unknown protein	C.G.	S.X.	Please select
0.25	8e-30	131	Oryza sativa	Os02g0269200	AK066218.1	-	Dynein light chain, type 1 family protein	9e-2	Atmg01260	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.219191.1.S1_at	pmrna35042	hypothetical protein	-	4e-3	At5g15700	DNA-directed RNA polymerase (RPOT2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	1e-39	163	Triticum aestivum	Ta.12881.1.A1_at	CD491515	-	-	6e-2	Atmg01260	-	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1608131_at	CB973224	-	-	2e-1	At2g22260	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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