CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.1506.1.A1_at

Gene name defence-related protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.1506.1.A1_at X82184.1 defence-related protein - 1e-1 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
0.44 55.7 Zm.18007.1.A1_at CK828176 - - 6e-48 At3g13490 OVA5 (OVULE ABORTION 5) S.X. H.G.
0.44 55.7 Zm.1967.1.A1_at BG836522 pathogenesis-related protein 10 /// pathogenesis-related protein 1 - 1e-23 At1g77180 chromatin protein family S.X. H.G.
0.44 55.7 Zm.9567.1.S1_at BM378205 - - 5e-10 At5g10780 - S.X. H.G.
0.17 10.6 Zm.17961.1.A1_at CK826694 - - 1e-4 At1g79050 DNA repair protein recA S.X. H.G.
0.08 3.4 Zm.1297.1.S1_at BE345371 hypothetical protein LOC100276762 - 1e+0 At1g23670 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
66.3 100.0 GSM253277 ZM_8d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
31.3 99.8 GSM253279 ZM_8d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
23.9 99.5 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
17.6 99.1 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
14.5 98.9 GSM385710 Deep-sowing 10d treatment TIBA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
13.8 98.8 GSM253249 ZM_12h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
9.7 98.3 GSM323172 Zm_SG200Dpep1_24hpi_III GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
7.8 97.9 GSM253246 ZM_12h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
7.6 97.9 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
4.3 96.1 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 2e-69 262 Zm.2227.1.A1_at BM381059 hypothetical protein LOC100191593 - 6e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.02 2e-7 56 Zm.3554.2.S1_at AW600585 Zea m 13 allergen - 4e+0 At3g07830 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.02 2e-7 56 Zm.3554.2.S1_x_at AW600585 Zea m 13 allergen - 4e+0 At3g07830 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.04 9e-7 54 ZmAffx.1168.1.S1_s_at AW600602 early fruit mRNA - 2e-1 At5g16380 unknown protein C.G. S.X.
0.04 9e-7 54 ZmAffx.1168.1.A1_at AW600602 - - 2e-1 At5g16380 unknown protein C.G. S.X.
0.03 1e-3 44 ZmAffx.1134.1.A1_at AW331087 - - 8e-1 At4g10270 wound-responsive family protein C.G. S.X.
0.03 1e-3 44 ZmAffx.1134.1.S1_at AW331087 - - 8e-1 At4g10270 wound-responsive family protein C.G. S.X.
0.03 1e-3 44 Zm.13835.1.S1_at CO518326 hypothetical protein LOC100193923 - 2e+0 At1g27640 unknown protein C.G. S.X.
0.03 4e-3 42 ZmAffx.1161.1.A1_at AW438287 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase - 5e-2 At5g51010 rubredoxin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-1 38 Arabidopsis thaliana At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. - - - C.G. S.X.
0.03 2e-1 38 Glycine max PsAffx.C39000047_at PsAffx.C39000047 - - 2e-2 At4g16750 DRE-binding transcription factor, putative C.G. S.X.
0.33 2e-32 139 Hordeum vulgare Contig2550_x_at Contig2550 pathogenesis-related protein 4 - 4e-4 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.25 6e-39 163 Oryza sativa Os11g0592000 AK121059.1 - Barwin 7e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.217772.1.S1_at pmrna33168 hypothetical protein - 1e+0 At5g01700 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.39 1e-91 337 Triticum aestivum TaAffx.112878.2.S1_at CA622120 - - 2e+1 At5g58200 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620518_at CF201341.1 - - 9e-14 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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