Gene omics information

Query gene ID	Zm.15.1.A1_at
Gene name	NADP malic enzyme3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.15.1.A1_at	AY271262.1	NADP malic enzyme3	-	3e-16	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	S.X.	H.G.	Please select
0.92	99.2	Zm.12526.1.A1_x_at	AI734393	-	-	3e+0	At1g58150	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.9952.1.A1_at	BM349898	-	-	6e+0	At5g46115	unknown protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.954.1.S1_at	AI833471	-	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.53	69.1	Zm.1690.1.A1_at	CK347441	density-regulated protein	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.17712.1.S1_at	CK370052	hypothetical protein LOC100275406	-	8e-20	At5g19855	unknown protein	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.917.1.S1_at	AI782944	-	-	1e+1	At5g26810	pectinesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	97.7	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.7	96.5	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	2099	Zm.2939.2.A1_a_at	U39958.1	NADP-dependent malic enzyme	-	1e-40	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	C.G.	S.X.	Please select
0.26	2e-21	103	Zm.2553.1.A1_a_at	BQ619023	NADP-dependent malic enzyme	-	5e-37	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	C.G.	S.X.	Please select
0.17	3e-8	59	Zm.16860.1.A1_at	CF648633	-	-	4e-4	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.9277.1.S1_at	AY105731.1	hypothetical protein LOC100193622	-	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.6644.1.S1_at	AY104341.1	hypothetical protein LOC100191256	-	2e-4	At5g42050	-	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.13863.1.A1_at	U69129.1	isocitrate lyase	-	4e-9	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.13863.1.S1_at	U69129.1	isocitrate lyase	-	4e-9	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.6255.1.A1_at	AI600697	-	-	7e-23	At4g03080	kelch repeat-containing serine/threonine phosphoesterase family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.6017.1.A1_at	AI666208	hypothetical protein LOC100274747 /// hypothetical protein LOC100277021	-	2e+0	At4g08230	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-16	87	Arabidopsis thaliana	At1g79750	844314	ATNADP-ME4 (NADP-malic enzyme 4)	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	7e-43	176	Glycine max	GmaAffx.92463.1.S1_at	CF808188	-	-	1e-47	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	C.G.	S.X.	Please select
0.50	1e-156	553	Hordeum vulgare	Contig4075_at	Contig4075	-	-	7e-23	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	C.G.	S.X.	Please select
0.64	0	1185	Oryza sativa	Os01g0188400	D16499.1	-	NADP-malic enzyme	2e-85	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	2e-18	95	Populus trichocarpa	Ptp.5508.1.S1_s_at	X56233.1	hypothetical protein	-	1e-74	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	0	1156	Triticum aestivum	Ta.18775.1.S1_at	AF467542.1	upregulated following infection by Puccinia (rust) species	-	8e-25	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	C.G.	S.X.	Please select
0.25	3e-26	119	Vitis vinifera	1610626_at	U67426.1	malate dehydrogenase	-	4e-71	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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