Gene omics information

Query gene ID	Zm.14912.1.S1_at
Gene name	Zea mays MADS7
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.3	Zm.14912.1.S1_at	BQ703314	Zea mays MADS7	-	1e-2	At2g45650	AGL6 (AGAMOUS-LIKE 6)	S.X.	H.G.	Please select
0.62	79.8	Zm.5141.1.A1_at	CF628146	-	-	2e-60	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	S.X.	H.G.	Please select
0.49	61.9	Zm.6259.1.A1_at	AI691171	transferase, transferring glycosyl groups	-	2e+0	At4g23490	fringe-related protein	S.X.	H.G.	Please select
0.47	59.9	Zm.4669.1.S1_at	AI737897	Growth-regulating factor 9-like	-	5e-5	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	S.X.	H.G.	Please select
0.44	55.7	Zm.467.1.S1_at	AF178950.1	voltage-dependent anion channel protein 1a	-	3e-3	At5g15090	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)	S.X.	H.G.	Please select
0.43	52.8	Zm.3044.2.S1_a_at	AI881563	-	-	8e-1	At1g59835	unknown protein	S.X.	H.G.	Please select
0.41	49.7	Zm.8581.1.A1_at	BM267381	hypothetical protein LOC100216584	-	4e-2	At3g46030	HTB11	S.X.	H.G.	Please select
0.41	49.7	Zm.5723.1.A1_at	BM079835	fiber protein Fb2	-	9e-3	At4g33740	unknown protein	S.X.	H.G.	Please select
0.39	45.6	Zm.743.1.S1_at	BG321150	hypothetical protein LOC100275158	-	5e-2	At5g65360	histone H3	S.X.	H.G.	Please select
0.38	44.2	Zm.14352.3.S1_at	CD448920	-	-	3e+0	At3g43420	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.5	100.0	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
44.3	100.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
30.9	99.8	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
25.4	99.6	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
21.1	99.4	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.7	98.5	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.3	98.4	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.7	98.3	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.7	98.1	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.6	98.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2157	Zm.14912.1.S1_s_at	BQ703314	m27 protein /// Zea mays MADS7	-	1e-2	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.49	0	1469	Zm.1703.1.S1_at	CO522762	M27 protein	-	6e-9	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.28	3e-78	291	Zm.13833.1.A1_at	CF649598	Zea mays MADS6 /// Zea mays MADS7	-	4e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.13	3e-72	272	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.13	4e-68	258	Zm.293.1.S1_at	L46398.1	MADS box protein	-	3e-3	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.09	5e-49	194	Zm.6382.1.A1_at	AI691625	m31 protein	-	4e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.09	7e-45	180	Zm.14828.1.S1_at	AJ430632.1	m15 protein	-	8e-10	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.10	3e-44	178	Zm.4424.1.A1_at	CO526301	m24 protein	-	5e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.09	1e-43	176	Zm.133.1.S1_at	L18924.1	homologue of Arabidopsis gene AGAMOUS	-	5e-8	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-2	42	Arabidopsis thaliana	At2g45650	819173	AGL6 (AGAMOUS-LIKE 6)	sequence suggests this encodes a MADS-box transcription factor	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	1e-9	65	Glycine max	GmaAffx.70788.1.S1_at	AI959798	-	-	8e-35	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.37	5e-148	523	Hordeum vulgare	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.47	1e-93	345	Oryza sativa	Os09g0507200	U78892.1	-	MADS box protein	1e-20	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-5	52	Populus trichocarpa	PtpAffx.207908.1.S1_at	pmrna15697	hypothetical protein	-	9e-36	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	6e-140	498	Triticum aestivum	Ta.13865.1.S1_at	AF543316.1	MADS box protein	-	3e-9	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.12	1e-5	50	Vitis vinifera	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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