Gene omics information

Query gene ID	Zm.14898.1.A1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.14898.1.A1_x_at	BM351319	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	S.X.	H.G.	Please select
0.67	85.8	Zm.7750.4.S1_at	AW499152	-	-	3e-28	At1g75780	TUB1	S.X.	H.G.	Please select
0.60	77.8	Zm.18084.1.A1_at	CD997940	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	S.X.	H.G.	Please select
0.44	55.7	Zm.2548.1.A1_at	AY106256.1	-	-	2e-26	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	S.X.	H.G.	Please select
0.19	12.8	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.3	99.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.9	99.7	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.0	99.6	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
12.9	98.7	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.3	98.0	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.7	96.5	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	880	Zm.14898.1.A1_at	BM351319	hypothetical protein LOC100193737	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	C.G.	S.X.	Please select
0.47	9e-166	581	Zm.3927.1.A1_at	BM350041	hypothetical protein LOC100193737	-	1e-8	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	C.G.	S.X.	Please select
0.13	8e-3	40	Zm.18053.1.A1_at	CK985525	-	-	6e-1	At3g19070	cell wall protein-related	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.7919.1.S1_at	BM080426	chaperone protein dnaJ 16	-	4e-3	At1g24120	ARL1 (ARG1-LIKE 1)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.5390.1.A1_at	BM078263	single-stranded DNA-binding protein	-	9e+0	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.4898.1.S1_at	BI417088	hypothetical protein LOC100279412	-	6e-25	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.03	8e+0	30	Zm.4907.1.S1_at	AW000018	RHB1A	-	1e-2	At3g62610	ATMYB11 (MYB DOMAIN PROTEIN 11)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.4323.1.S1_at	AY110219.1	-	-	2e+0	At1g49150	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.4323.1.A1_a_at	AY110219.1	hypothetical protein LOC100273955	-	2e+0	At1g49150	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g43800	823491	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	HgAffx.12621.1.S1_at	CB378416	-	-	5e+0	At5g50361	unknown protein	C.G.	S.X.	Please select
0.22	3e-18	91	Hordeum vulgare	Contig5534_at	Contig5534	-	-	2e-10	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	C.G.	S.X.	Please select
0.28	1e-26	121	Oryza sativa	Os06g0603000	AK104955.1	-	Heme oxygenase 1 (Fragment)	1e-2	At1g58300	ho4 (HEME OXYGENASE 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.37778.1.S1_s_at	CF233220	hypothetical protein	-	8e-12	At1g05960	binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	9e-17	87	Triticum aestivum	Ta.21869.1.S1_x_at	CK153891	-	-	5e-8	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1610512_at	CD798938	hypothetical protein LOC100241828	-	6e-2	At1g75250	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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