Gene omics information

Query gene ID	Zm.14841.1.A1_at
Gene name	hypothetical protein LOC100191514
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.14841.1.A1_at	AI491693	hypothetical protein LOC100191514	-	2e+0	At2g07681	cytochrome c biogenesis protein, putative	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.889.1.S1_at	AI770841	pre-mRNA processing factor	-	8e-7	At2g40650	pre-mRNA splicing factor PRP38 family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.4166.1.A1_at	BG841131	hypothetical protein LOC100191831	-	1e+0	At1g17145	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.53	69.1	Zm.6188.2.S1_at	AY108898.1	hypothetical protein LOC100194248	-	4e-2	At1g31140	agl63 (AGAMOUS-LIKE 63)	S.X.	H.G.	Please select
0.32	33.4	Zm.34.2.S1_at	AY103769.1	-	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	S.X.	H.G.	Please select
0.26	22.7	Zm.1368.1.A1_at	CA399867	calcineurin B-like protein 3	-	3e-40	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.6	95.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.2	94.5	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.0	94.0	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	3e-173	607	Zm.13053.1.A1_at	CA402053	cupin, RmlC-type	-	2e+0	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6586.1.A1_at	AY106046.1	hypothetical protein LOC100273042	-	5e-20	At1g61150	-	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3161.1.S1_at	AY108575.1	hypothetical protein LOC100273395	-	3e-6	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.4880.1.S1_at	CF627543	hypothetical protein LOC100276737	-	2e+0	At4g13110	BSD domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8685.1.A1_at	CB351143	-	-	5e+0	At5g27820	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8555.1.A1_at	BM075305	hypothetical protein LOC100280007	-	4e-1	At1g67350	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6590.1.A1_at	AY108493.1	Hypothetical protein LOC100191320	-	4e-114	At5g20890	chaperonin, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6139.2.A1_at	CF018619	methionyl-tRNA synthetase	-	1e-5	At2g40660	tRNA-binding region domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5423.1.S1_a_at	CD997936	mitochondrial import receptor subunit TOM40 /// mitochondrial import receptor subunit TOM40	-	3e-3	At3g20000	TOM40	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g07681	815356	cytochrome c biogenesis protein, putative	F:heme transporter activity;P:cytochrome complex assembly, respiratory chain complex IV assembly, heme transport, protein complex assembly;C:membrane;OBPAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	Gma.15020.3.S1_a_at	BM886954	-	-	8e-1	At1g60740	peroxiredoxin type 2, putative	C.G.	S.X.	Please select
0.19	8e-66	250	Hordeum vulgare	Contig8216_at	Contig8216	-	-	2e-1	At2g42670	unknown protein	C.G.	S.X.	Please select
0.14	2e-60	234	Oryza sativa	Os04g0151900	AK066797.1	-	Conserved hypothetical protein	3e-2	At5g54460	wound-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.5179.3.S1_a_at	CV277722	hypothetical protein	-	5e-4	At2g42670	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	2e-59	230	Triticum aestivum	Ta.9147.1.S1_at	BJ306360	-	-	2e-1	At2g42670	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1618889_at	CB981513	-	-	2e-1	At4g08230	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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