Gene omics information

Query gene ID	Zm.14827.1.S1_at
Gene name	m21 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.14827.1.S1_at	AJ430635.1	m21 protein	-	1e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.18394.1.A1_at	CO534001	ATP-dependent Clp protease ATP-binding subunit clpX	-	1e-27	At5g53350	CLPX	S.X.	H.G.	Please select
0.36	41.3	Zm.6001.1.A1_at	CK144994	hypothetical protein AY107629 /// hypothetical protein LOC100272871 /// ATP binding protein	-	2e-1	At3g57280	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.19018.1.A1_at	CO532922	hypothetical protein LOC100193009	-	3e+0	At4g38120	binding	S.X.	H.G.	Please select
0.35	38.9	Zm.8675.2.A1_a_at	BQ293935	nicotiana lesion-inducing like	-	3e-1	At2g07728	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.13696.1.S1_at	CF035266	hypothetical protein LOC100192791	-	2e+0	At4g37685	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.5504.1.A1_at	AY105885.1	hypothetical protein LOC100273181	-	5e+0	At2g28370	-	S.X.	H.G.	Please select
0.32	33.4	Zm.31.3.S1_a_at	CD446711	16-kDa zein protein	-	6e-1	At5g15560	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.7082.2.S1_at	CO523732	hypothetical protein LOC100194344	-	1e-23	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	S.X.	H.G.	Please select
0.30	29.8	Zm.6686.2.A1_at	AY110308.1	-	-	6e+0	At4g16580	catalytic	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.8	98.8	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.2	98.8	GSM206320	Lower pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.6	98.6	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.0	98.5	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.8	98.5	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.8	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	1859	Zm.14827.1.A1_at	AJ430635.1	m21 protein	-	1e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.14	1e-46	186	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.14	3e-34	145	Zm.14824.1.S1_at	AJ430693.1	hypothetical protein LOC100217247 /// m26 protein	-	5e-1	At2g16600	ROC3	C.G.	S.X.	Please select
0.06	4e-18	91	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	C.G.	S.X.	Please select
0.07	3e-16	85	Zm.3907.1.S1_at	L81162.2	AGAMOUS-like protein /// M2 protein	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.05	2e-14	79	Zm.3851.1.A1_at	CK394813	-	-	4e-9	At5g40670	PQ-loop repeat family protein / transmembrane family protein	C.G.	S.X.	Please select
0.07	7e-14	77	Zm.4578.2.S1_at	CO521260	hypothetical protein LOC100279630 /// MADS1	-	2e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.06	7e-14	77	Zm.4424.1.A1_at	CO526301	m24 protein	-	5e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.07	7e-14	77	Zm.14826.1.A1_at	AJ430637.1	m23 protein	-	2e-16	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At1g28200	839714	FIP1 (FH INTERACTING PROTEIN 1)	VirF-interacting protein FIP1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-2	40	Glycine max	GmaAffx.9006.2.S1_at	BG789532	-	-	2e-4	At4g24540	AGL24 (AGAMOUS-LIKE 24)	C.G.	S.X.	Please select
0.33	4e-77	287	Hordeum vulgare	Contig4517_at	Contig4517	-	-	1e-7	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.21	3e-59	230	Oryza sativa	Os06g0217300	AY345223.2	-	Transcription factor MADS55	6e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.203506.1.S1_s_at	pmrna6972	hypothetical protein	-	3e+0	At5g17610	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	1e-41	171	Triticum aestivum	Ta.6743.1.S1_at	BJ320266	MADS-box transcription factor TaAGL11	-	4e-11	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1619977_at	BQ794993	hypothetical protein LOC100251508	-	3e-27	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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