Gene omics information

Query gene ID	Zm.14825.1.A1_at
Gene name	m25 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.14825.1.A1_at	AJ430639.1	m25 protein	-	5e-1	At4g09960	STK (SEEDSTICK)	S.X.	H.G.	Please select
0.67	85.8	Zm.17338.4.A1_at	AI670678	Hypothetical protein LOC100193489	-	3e+0	At5g27820	ribosomal protein L18 family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.789.1.S1_at	AI964685	protein phosphatase 2C	-	1e-6	At3g51370	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.42	51.3	Zm.5500.1.A1_at	AI622280	hypothetical protein LOC100272359	-	7e-2	At1g79260	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.2197.1.S1_a_at	AF007785.1	cystathionine gamma-synthase1	-	6e-5	At3g01120	MTO1 (METHIONINE OVERACCUMULATION 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.6166.2.A1_at	CO529261	hypothetical protein LOC100278925	-	6e-2	At1g13870	DRL1 (DEFORMED ROOTS AND LEAVES 1)	S.X.	H.G.	Please select
0.31	31.6	Zm.10799.1.S1_at	AY108939.1	hypothetical protein LOC100192060	-	3e+0	At5g20110	dynein light chain, putative	S.X.	H.G.	Please select
0.18	11.6	Zm.17055.1.S1_at	CF972499	-	-	2e-2	At1g12665	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.1	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.7	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.6	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	0	954	Zm.14825.1.S1_at	AJ430639.1	m25 protein	-	5e-1	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.07	2e-13	75	Zm.134.1.S1_at	U31521.1	Zea AGAMOUS homolog2	-	5e-11	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.04	6e-11	67	Zm.6382.1.A1_at	AI691625	m31 protein	-	4e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.04	6e-11	67	Zm.4424.1.A1_at	CO526301	m24 protein	-	5e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.05	2e-10	65	Zm.578.1.S1_at	AF112150.1	MADS box protein 3	-	3e-3	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.06	2e-10	65	Zm.14366.1.S1_at	CD438154	m28 protein	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.04	1e-8	59	Zm.293.1.S1_at	L46398.1	MADS box protein	-	3e-3	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.04	1e-8	59	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.05	1e-8	59	Zm.133.1.S1_at	L18924.1	homologue of Arabidopsis gene AGAMOUS	-	5e-8	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-1	36	Arabidopsis thaliana	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-4	46	Glycine max	Gma.6760.1.S1_at	BU544178	-	-	1e-42	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.07	2e-4	46	Hordeum vulgare	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.37	5e-98	359	Oryza sativa	Os01g0886200	AY551913.1	-	AGAMOUS homolog	8e-3	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	38	Populus trichocarpa	PtpAffx.162863.1.S1_at	BU882965	hypothetical protein	-	1e-6	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	9e-9	61	Triticum aestivum	Ta.14469.2.A1_a_at	CD374109	MADS-box transcription factor TaAGL16	-	2e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.06	6e-7	54	Vitis vinifera	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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