CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.1481.1.A1_at

Gene name hypothetical protein LOC100279302

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.1481.1.A1_at BG841913 hypothetical protein LOC100279302 - 1e-1 At5g16400 ATF2 S.X. H.G.
0.57 75.1 Zm.4710.1.A1_at AI738125 hypothetical protein LOC100280041 - 3e+0 At4g34410 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) S.X. H.G.
0.57 75.1 Zm.6402.1.S1_at AY103865.1 DELLA protein DWARF8 - 3e-1 At3g03450 RGL2 (RGA-LIKE 2) S.X. H.G.
0.50 65.7 Zm.14354.1.S1_x_at CK370303 40S ribosomal protein S29 /// 40S ribosomal protein S29 - 2e-11 At4g33865 40S ribosomal protein S29 (RPS29C) S.X. H.G.
0.48 61.3 Zm.6131.1.S1_at AY105213.1 hypothetical protein LOC100191528 - 7e-1 At1g74560 NRP1 (NAP1-RELATED PROTEIN 1) S.X. H.G.
0.42 51.3 Zm.5196.1.A1_at BM334572 PHD-finger family protein - 1e+0 At2g24430 ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.0 99.4 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.9 98.7 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.3 98.5 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.1 98.5 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.8 98.5 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.2 98.2 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.8 97.9 GSM206319 Lower pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.0 97.7 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.9 97.7 GSM206292 Upper pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.8 97.6 GSM206297 Lower pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.74 0 952 Zm.1481.2.S1_at BM079345 hypothetical protein LOC100279302 - 9e-2 At5g16400 ATF2 C.G. S.X.
0.25 1e-61 236 Zm.6294.1.A1_at AI691294 - - 3e+0 At5g66550 Maf family protein C.G. S.X.
0.12 1e-33 143 Zm.3831.1.S1_at CF627002 hypothetical protein LOC100274341 - 7e-6 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) C.G. S.X.
0.16 7e-29 127 Zm.15742.1.A1_at CD446346 - - 8e+0 Atmg00820 - C.G. S.X.
0.07 9e-13 73 Zm.5718.1.A1_at BM336876 hypothetical protein LOC100278767 - 6e+0 At5g66005 Expressed protein C.G. S.X.
0.08 3e-12 71 Zm.9765.1.A1_at BM338217 - - 4e+0 At5g17310 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative C.G. S.X.
0.11 2e-10 65 Zm.8058.1.A1_at BM350356 - - 6e+0 At4g02580 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative C.G. S.X.
0.05 2e-7 56 Zm.13088.1.A1_at CA404275 - - 9e-1 At3g29720 transferase-related C.G. S.X.
0.05 3e-6 52 Zm.17603.1.S1_at CK371256 - - 7e+0 At5g44920 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At5g16400 831501 ATF2 Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma. - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.29652.1.A1_at CD412416 - - 3e+0 At3g27690 LHCB2.3 C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig5314_s_at Contig5314 - - 3e-1 At1g53935 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.30906.1.S1_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.207362.1.S1_s_at pmrna14603 hypothetical protein - 6e-18 At3g50880 HhH-GPD base excision DNA repair family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.28455.1.S1_at CF134339 - - 2e-2 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1622852_at CB982747 - - 4e+0 At5g06790 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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