Gene omics information

Query gene ID	Zm.14790.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.37	42.3	Zm.14790.1.A1_at	BM079805	-	-	2e+1	At5g42635	glycine-rich protein	S.X.	H.G.	Please select
0.60	77.8	Zm.9407.1.A1_at	BM268507	plastid-lipid-associated protein 2	-	3e-2	At4g04020	FIB (FIBRILLIN)	S.X.	H.G.	Please select
0.22	16.9	Zm.1248.1.A1_at	CF649214	hypothetical protein LOC100274169	-	1e+0	At3g16240	DELTA-TIP	S.X.	H.G.	Please select
0.16	9.4	ZmAffx.1144.1.S1_at	AW400064	Hypothetical protein LOC100193235	-	2e-4	At2g25140	CLPB4 (CASEIN LYTIC PROTEINASE B4)	S.X.	H.G.	Please select
0.06	2.3	ZmAffx.278.1.A1_at	AI670406	-	-	8e-1	At1g73875	endonuclease/exonuclease/phosphatase family protein	S.X.	H.G.	Please select
0.02	0.7	Zm.9756.1.A1_at	BM338065	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.1	99.9	GSM258202	B14a 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
17.8	99.1	GSM202409	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
14.5	98.9	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
13.4	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM258205	B14a 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
9.8	98.3	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.8	98.1	GSM258199	B14a 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
8.6	98.1	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	1e-100	365	Zm.7000.1.A1_at	CK827521	hypothetical protein LOC100275012 /// hypothetical protein LOC100276117 /// hypothetical protein LOC100277141 /// ustilago maydis induced11	-	5e+0	At2g42940	DNA-binding family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.17600.1.S1_at	CK368995	guanylate kinase	-	3e-1	At3g06200	guanylate kinase, putative	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.17314.1.S1_at	CK369303	hypothetical protein LOC100277063	-	3e+0	At4g19620	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.3740.1.A1_at	BG840857	22.0 kDa class IV heat shock protein	-	1e-1	At4g24240	WRKY7	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2093.1.S1_at	AF440223.1	HMG type nucleosome/chromatin assembly factor D	-	2e+0	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.17608.2.S1_a_at	CK370879	hypothetical protein LOC100274314	-	5e+0	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.13580.1.A1_at	AI677218	lipase	-	4e-1	At4g14270	-	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.4831.1.S1_at	AY106461.1	-	-	4e-4	At3g22960	PKP-ALPHA	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.4376.1.A1_at	AI712238	hypothetical protein LOC100275363	-	2e+0	At2g23830	vesicle-associated membrane protein, putative / VAMP, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g42635	834271	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	PsAffx.psMY009iF08r_s_at	PsAffx.psMY009iF08r	-	-	2e+0	At4g17085	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	HVSMEg0001I20f_x_at	HVSMEg0001I20f	-	-	2e-1	At1g80780	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.02	7e-1	36	Oryza sativa	Os06g0498800	AK107056.1	-	MOTHER of FT and TF1 protein	4e-1	At1g18100	E12A11	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.207678.1.S1_at	pmrna15247	hypothetical protein	-	1e+0	At2g32890	RALFL17 (RALF-LIKE 17)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	4e-7	56	Triticum aestivum	TaAffx.112665.1.S1_at	CA622091	-	-	3e-1	At5g61500	ATG3	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620103_at	CF209698	-	-	3e+0	At5g64400	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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