Gene omics information

Query gene ID	Zm.14789.2.S1_a_at
Gene name	hypothetical protein LOC100193117 /// hypothetical protein LOC100279921
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.14789.2.S1_a_at	BM380358	hypothetical protein LOC100193117 /// hypothetical protein LOC100279921	-	3e-1	At4g15150	glycine-rich protein	S.X.	H.G.	Please select
0.61	79.5	Zm.10842.1.S1_a_at	AF493800.1	DRE binding factor 1	-	1e-4	At2g22200	AP2 domain-containing transcription factor	S.X.	H.G.	Please select
0.60	77.8	Zm.612.1.A1_at	AF326500.1	tonoplast membrane integral protein ZmTIP1-2	-	3e-8	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.7287.1.A1_at	BI679759	-	-	1e+0	At5g02440	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.6045.2.A1_a_at	BM337093	guanine nucleotide-binding protein beta subunit-like protein	-	2e-10	At1g18080	ATARCA	S.X.	H.G.	Please select
0.15	8.6	Zm.9317.1.A1_at	BM341145	-	-	4e+0	At3g43740	leucine-rich repeat family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
61.4	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1029	Zm.14789.2.S1_x_at	BM380358	hypothetical protein LOC100279921	-	3e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.96	0	1029	Zm.14789.2.S1_at	BM380358	Hypothetical protein LOC100193117	-	3e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.60	2e-166	583	Zm.14789.1.A1_at	BM079750	Hypothetical protein LOC100193117	-	5e-3	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.42	3e-162	569	Zm.14789.3.S1_a_at	CF010106	hypothetical protein LOC100193117	-	4e-5	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.05	2e-6	52	Zm.15829.1.A1_at	AY103873.1	nascent polypeptide-associated complex alpha subunit-like protein	-	5e-35	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please select
0.02	7e-3	40	Zm.6107.1.A1_at	AY488135.1	allene oxide synthase	-	4e+0	At5g52480	-	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.10085.1.A1_at	BM382598	-	-	6e+0	At4g02270	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6054.1.A1_at	AW497492	-	-	3e+0	At5g25490	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Zm.17790.1.S1_at	CK370971	-	-	2e-1	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-1	36	Arabidopsis thaliana	At4g15150	827181	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-4	46	Glycine max	PsAffx.CL863Contig1_at	PsAffx.CL863Contig1	-	-	8e+0	At4g09840	unknown protein	C.G.	S.X.	Please select
0.18	9e-43	173	Hordeum vulgare	Contig2960_at	Contig2960	-	-	2e+0	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.15	1e-29	131	Oryza sativa	Os02g0465900	AB112061.1	-	ChaC-like protein family protein	3e-3	At4g31290	ChaC-like family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	6e-3	42	Populus trichocarpa	PtpAffx.203102.1.S1_at	pmrna6140	hypothetical protein	-	6e-1	At5g26220	ChaC-like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	5e-40	165	Triticum aestivum	Ta.10764.2.S1_a_at	BJ231345	-	-	4e-2	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1610920_at	CB979986	hypothetical protein LOC100257224	-	7e-14	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage