Gene omics information

Query gene ID	Zm.14541.1.S1_a_at
Gene name	agmatine coumaroyltransferase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.14541.1.S1_a_at	AY107924.1	agmatine coumaroyltransferase	-	2e+1	At5g18403	-	S.X.	H.G.	Please select
0.73	89.9	Zm.14540.1.A1_at	AY108502.1	RNA-binding region RNP-1	-	2e+0	At3g29034	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.6212.1.A1_at	AI677302	-	-	8e-1	At4g19270	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.2347.1.S1_at	AW424529	-	-	3e-11	At1g72300	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.3747.1.S1_at	BM267525	-	-	3e-1	At2g42930	glycosyl hydrolase family protein 17	S.X.	H.G.	Please select
0.36	41.3	Zm.1454.1.A1_at	BG841866	-	-	4e-1	At3g63170	chalcone isomerase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
62.5	100.0	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
36.2	99.9	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
34.5	99.9	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
17.5	99.1	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.3	97.4	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.8	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.1	96.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.6	96.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	9e-43	173	Zm.2569.1.A1_at	CF635472	agmatine coumaroyltransferase	-	7e+0	At4g27900	-	C.G.	S.X.	Please select
0.04	1e-4	46	Zm.4720.1.S1_at	AY108931.1	-	-	7e-2	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please select
0.04	1e-4	46	Zm.4720.1.A1_a_at	AY108931.1	-	-	7e-2	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please select
0.02	1e-4	46	Zm.2574.1.A1_at	AY104948.1	hypothetical protein LOC100274571	-	6e-2	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	C.G.	S.X.	Please select
0.01	1e-4	46	Zm.2247.1.A1_at	BG321065	hypothetical protein LOC100193340	-	1e-21	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.3904.1.S1_at	AY109271.1	seed specific protein Bn15D17A	-	3e-1	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	C.G.	S.X.	Please select
0.03	2e-3	42	Zm.14540.1.A1_at	AY108502.1	RNA-binding region RNP-1	-	2e+0	At3g29034	unknown protein	C.G.	S.X.	Please select
0.01	8e-3	40	Zm.9042.1.A1_at	AY044158.1	hypothetical protein LOC100273864	-	7e-5	At3g51190	structural constituent of ribosome	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.11821.1.A1_at	AY109049.1	hypothetical protein LOC100192061	-	4e-7	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g18403	3770706	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-4	46	Glycine max	GmaAffx.6606.1.A1_s_at	CD410928	-	-	7e-1	At5g50136	unknown protein	C.G.	S.X.	Please select
0.11	1e-8	59	Hordeum vulgare	Contig5587_at	Contig5587	-	-	8e-1	At2g30130	ASL5	C.G.	S.X.	Please select
0.30	4e-33	143	Oryza sativa	Os07g0244600	9635.m01398	-	Hypothetical protein	2e-3	At2g04190	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.123151.1.A1_at	CK090205	hypothetical protein	-	1e-30	At4g02890	UBQ14	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	3e-75	282	Triticum aestivum	TaAffx.25358.1.S1_at	CA720263	-	-	1e+0	At5g15480	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1621075_at	BQ799036	hypothetical protein LOC100255759	-	5e+0	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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