Gene omics information

Query gene ID	Zm.14536.1.A1_at
Gene name	SET domain protein SDG117
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	S.X.	H.G.	Please select
0.91	99.0	Zm.4592.1.A1_at	BM348651	hypothetical protein LOC100275868	-	8e+0	At5g39690	ANAC093 (Arabidopsis NAC domain containing protein 93)	S.X.	H.G.	Please select
0.83	95.6	Zm.18325.1.S1_at	CO530408	lipid binding protein	-	2e+0	At5g02560	HTA12	S.X.	H.G.	Please select
0.60	77.8	Zm.4595.1.A1_at	AI737265	-	-	4e-1	At1g30190	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	S.X.	H.G.	Please select
0.44	55.7	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7	96.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Zm.6650.1.A1_at	BM336595	fiber protein Fb2	-	3e+0	At5g35695	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.6558.1.S1_at	AF073329.1	eukaryotic initiation factor3	-	1e-10	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.5228.1.A1_at	AW061845	hypothetical protein LOC100278989	-	3e+0	At4g25840	GPP1 (glycerol-3-phosphatase 1)	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.4227.1.A1_at	CF625229	TBC domain containing protein	-	3e-12	At5g54780	RAB GTPase activator	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.3053.1.S1_at	AW289101	hypothetical protein LOC100192503	-	2e-17	At4g01320	ATSTE24	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.2028.1.S1_at	AY105274.1	acyl-protein thioesterase 1	-	4e-5	At4g22300	SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1)	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.18672.1.A1_at	CO522055	hypothetical protein LOC100273696	-	6e+0	At5g26960	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.16322.1.A1_at	BG873909	hypothetical protein LOC100280029	-	2e+0	At5g62330	-	C.G.	S.X.	Please select
0.01	4e+0	34	Zm.16146.1.A1_at	CF632443	hypothetical protein LOC100192115	-	3e+0	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	38	Arabidopsis thaliana	At1g55260	841970	lipid binding	F:lipid binding;P:lipid transport;C:nucleus, anchored to membrane;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	7e-1	38	Glycine max	GmaAffx.82074.1.S1_at	BI424451	-	-	3e+0	At4g10870	unknown protein	C.G.	S.X.	Please select
0.10	6e-27	123	Hordeum vulgare	Contig25049_at	Contig25049	-	-	2e+0	At1g20280	homeobox-leucine zipper protein-related	C.G.	S.X.	Please select
0.49	1e-95	353	Oryza sativa	Os02g0708600	AK108743.1	-	Nuclear protein SET domain containing protein	1e-3	At5g17950	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-7	59	Populus trichocarpa	PtpAffx.207324.1.S1_at	pmrna14521	hypothetical protein	-	7e-18	At2g23740	nucleic acid binding / transcription factor/ zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	1e-20	103	Triticum aestivum	TaAffx.15039.1.S1_at	CD490367	-	-	5e-1	At5g44710	-	C.G.	S.X.	Please select
0.01	6e-1	36	Vitis vinifera	1619976_at	CF604790	hypothetical protein LOC100266753	-	4e-19	At1g20823	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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