Gene omics information

Query gene ID	Zm.14498.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.14498.2.A1_at	AI691791	-	-	2e-4	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	S.X.	H.G.	Please select
0.83	95.6	Zm.9803.1.A1_at	BM339320	-	-	1e+0	At1g64740	TUA1 (ALPHA-1 TUBULIN)	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.739.1.S1_at	AI740090	-	-	8e-1	At3g28070	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.4586.1.A1_at	AW499317	-	-	4e-2	At2g06420	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4914.1.S1_at	CD437635	-	-	8e-4	At5g49330	AtMYB111 (myb domain protein 111)	S.X.	H.G.	Please select
0.55	71.6	Zm.4988.1.A1_at	AY111117.1	Hypothetical protein LOC100193664	-	2e+0	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.4	97.5	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.4	97.5	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.8	97.2	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.3	96.9	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.2	96.9	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.0	96.7	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	876	Zm.14498.1.A1_at	AF332170.1	alpha expansin2	-	3e-15	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.25	4e-34	145	Zm.665.1.S1_at	AF332169.1	alpha expansin1	-	7e-13	At2g37640	EXP3	C.G.	S.X.	Please select
0.26	2e-32	139	Zm.669.1.S1_at	AF332173.1	alpha-expansin 5	-	8e-4	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.26	8e-20	97	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.26	8e-20	97	Zm.13728.2.S1_a_at	AY106266.1	alpha-expansin 4	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.21	1e-15	83	Zm.11756.1.A1_x_at	BM380495	Alpha expansin2	-	3e+0	At1g35537	-	C.G.	S.X.	Please select
0.19	3e-13	75	Zm.13728.1.S1_at	AF332172.1	alpha-expansin 4	-	2e-19	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.05	7e-11	67	Zm.667.1.A1_at	AF332171.1	alpha-expansin 3	-	1e-7	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please select
0.05	1e-6	54	Zm.3884.1.A1_at	BQ486479	alpha-expansin 9	-	1e-1	At1g04778	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-4	48	Arabidopsis thaliana	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-8	61	Glycine max	GmaAffx.93176.1.S1_s_at	CF808901	expansin	-	2e-24	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select
0.44	2e-104	379	Hordeum vulgare	Contig7055_at	Contig7055	-	-	1e-5	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.47	0	664	Oryza sativa	Os02g0744200	AF247162.1	-	Alpha-expansin OsEXPA5	2e-10	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-5	50	Populus trichocarpa	PtpAffx.203608.1.S1_at	pmrna7152	hypothetical protein	-	2e-8	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	4e-76	286	Triticum aestivum	Ta.1400.2.S1_a_at	BQ839416	-	-	1e-3	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.14	5e-11	67	Vitis vinifera	1619082_at	CF215502	hypothetical protein LOC100244103	-	3e-26	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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