Gene omics information

Query gene ID	Zm.14497.4.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.14497.4.A1_at	CF631109	-	-	4e-13	At1g07790	HTB1	S.X.	H.G.	Please select
0.89	96.8	Zm.2385.2.A1_at	AY111554.1	hypothetical protein LOC100276100	-	1e-15	At2g34510	-	S.X.	H.G.	Please select
0.84	95.8	Zm.6420.1.A1_at	BM073145	hypothetical protein LOC100279192	-	1e-12	At1g43850	SEU (seuss)	S.X.	H.G.	Please select
0.84	95.8	Zm.5809.1.A1_at	AI649739	ATATH13	-	4e-40	At5g64940	ATATH13	S.X.	H.G.	Please select
0.82	94.6	Zm.4468.1.A1_at	AW288919	-	-	2e-17	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please select
0.80	94.0	Zm.13287.1.S1_at	CA826822	-	-	4e+0	At2g26010	PDF1.3 (plant defensin 1.3)	S.X.	H.G.	Please select
0.78	92.5	Zm.11255.1.A1_at	AY107659.1	Hypothetical protein LOC100217136	-	3e-32	At5g40200	DegP9 (DegP protease 9)	S.X.	H.G.	Please select
0.73	89.9	Zm.12517.1.A1_at	CF624446	Hypothetical protein LOC100191598	-	2e+0	At4g16024	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.14272.3.A1_at	BG835930	Corn cystatin I	-	1e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	96.6	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.8	96.6	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.6	96.4	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.5	96.3	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.4	96.2	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.4	96.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.1	95.9	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.7	95.4	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	3e-172	603	Zm.14497.1.A1_at	U08226.1	histone H2B	-	1e-26	At1g07790	HTB1	C.G.	S.X.	Please select
0.52	3e-138	490	Zm.16065.2.A1_at	BM080549	Histone H2B.3	-	8e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.52	3e-138	490	Zm.16065.2.A1_s_at	BM080549	Histone H2B.3	-	8e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.56	2e-136	484	Zm.16065.1.S1_at	CF602481	Histone H2B.1	-	7e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.54	8e-136	482	Zm.14497.15.A1_x_at	CF016873	Histone H2B.2	-	4e-10	At1g07790	HTB1	C.G.	S.X.	Please select
0.50	7e-130	462	Zm.14497.11.S1_at	BQ619270	-	-	3e-8	At5g59910	HTB4	C.G.	S.X.	Please select
0.56	3e-129	460	Zm.14497.9.S1_at	BM382119	-	-	2e-15	At5g59910	HTB4	C.G.	S.X.	Please select
0.48	2e-127	454	Zm.14497.3.A1_at	CF012535	hypothetical protein LOC100274083	-	2e-15	At5g22880	HTB2	C.G.	S.X.	Please select
0.50	2e-124	444	Zm.14497.12.A1_at	CA404826	hypothetical protein LOC100192792	-	6e-22	At1g07790	HTB1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-13	75	Arabidopsis thaliana	At1g07790	837293	HTB1	Encodes a histone 2B (H2B) protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	9e-55	214	Glycine max	Gma.16885.1.S1_at	AW570537	-	-	4e-31	At3g45980	HTB9	C.G.	S.X.	Please select
0.61	1e-156	551	Hordeum vulgare	Contig1140_at	Contig1140	-	-	3e-17	At1g07790	HTB1	C.G.	S.X.	Please select
0.53	1e-125	450	Oryza sativa	Os01g0152300	CF291303	-	Histone H2B.1	8e-24	At1g07790	HTB1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	5e-7	56	Populus trichocarpa	Ptp.2286.1.S1_at	CF232112	histone 2	-	4e-29	At5g22880	HTB2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	2e-166	585	Triticum aestivum	Ta.7378.20.S1_x_at	BJ308740	-	-	9e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.41	1e-19	95	Vitis vinifera	1615448_at	CF568935	-	-	1e-61	At5g59910	HTB4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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