Gene omics information

Query gene ID	Zm.14497.1.A1_at
Gene name	histone H2B
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.14497.1.A1_at	U08226.1	histone H2B	-	1e-26	At1g07790	HTB1	S.X.	H.G.	Please select
0.57	75.1	Zm.155.2.S1_at	AY109498.1	-	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.56	74.4	Zm.3303.2.A1_at	CO527646	lipoxygenase	-	3e+0	At3g22400	LOX5	S.X.	H.G.	Please select
0.55	71.6	Zm.1011.1.S1_at	BM073180	hypothetical protein LOC100192700	-	3e+0	At1g35242	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.62.1.S1_at	X55314.1	anthocyaninless2	-	6e+0	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please select
0.42	51.3	Zm.12150.2.S1_at	AI619383	hypothetical protein LOC100273319	-	9e-1	At4g31340	myosin heavy chain-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	97.8	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.8	97.2	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.4	97.0	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.0	96.7	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7	96.5	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.6	96.4	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
4.3	96.1	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	4e-172	603	Zm.14497.4.A1_at	CF631109	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select
0.43	1e-147	521	Zm.14497.3.A1_at	CF012535	hypothetical protein LOC100274083	-	2e-15	At5g22880	HTB2	C.G.	S.X.	Please select
0.49	5e-147	519	Zm.14497.12.A1_at	CA404826	hypothetical protein LOC100192792	-	6e-22	At1g07790	HTB1	C.G.	S.X.	Please select
0.40	7e-143	506	Zm.14497.5.S1_at	CD440280	-	-	3e-21	At1g07790	HTB1	C.G.	S.X.	Please select
0.44	1e-141	502	Zm.14497.11.S1_at	BQ619270	-	-	3e-8	At5g59910	HTB4	C.G.	S.X.	Please select
0.45	4e-138	490	Zm.16065.2.A1_at	BM080549	Histone H2B.3	-	8e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.45	4e-138	490	Zm.16065.2.A1_s_at	BM080549	Histone H2B.3	-	8e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.50	1e-135	482	Zm.16065.1.S1_at	CF602481	Histone H2B.1	-	7e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.49	1e-125	448	Zm.14497.9.S1_at	BM382119	-	-	2e-15	At5g59910	HTB4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-26	121	Arabidopsis thaliana	At1g07790	837293	HTB1	Encodes a histone 2B (H2B) protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	8e-53	208	Glycine max	Gma.16885.1.S1_at	AW570537	-	-	4e-31	At3g45980	HTB9	C.G.	S.X.	Please select
0.52	6e-153	539	Hordeum vulgare	Contig1140_at	Contig1140	-	-	3e-17	At1g07790	HTB1	C.G.	S.X.	Please select
0.47	4e-129	462	Oryza sativa	Os01g0152300	CF291303	-	Histone H2B.1	8e-24	At1g07790	HTB1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	4e-11	69	Populus trichocarpa	Ptp.2286.1.S1_at	CF232112	histone 2	-	4e-29	At5g22880	HTB2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	1239	Triticum aestivum	Ta.27179.1.S1_at	BT009118.1	-	-	2e-12	At1g07790	HTB1	C.G.	S.X.	Please select
0.41	3e-30	131	Vitis vinifera	1615448_at	CF568935	-	-	1e-61	At5g59910	HTB4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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