CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.14437.2.S1_at

Gene name RNA binding protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 81.1 Zm.14437.2.S1_at AI600681 RNA binding protein - 3e+0 At5g66010 RNA binding / nucleic acid binding / nucleotide binding S.X. H.G.
0.61 79.5 ZmAffx.742.1.S1_at AI740139 - - 3e+0 At1g10650 protein binding / zinc ion binding S.X. H.G.
0.38 44.2 ZmAffx.894.1.A1_at AI770873 - - 8e-1 At5g62300 40S ribosomal protein S20 (RPS20C) S.X. H.G.
0.32 33.4 Zm.2102.1.A1_at AW267527 hypothetical protein LOC100274069 - 3e-3 At2g32080 PUR ALPHA-1 S.X. H.G.
0.14 7.7 Zm.14664.1.A1_at BM379705 hypothetical protein LOC100274353 - 9e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) S.X. H.G.
0.08 3.4 ZmAffx.1019.1.S1_at AI881532 - - 3e+0 At2g29070 ubiquitin fusion degradation UFD1 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 96.7 GSM205366 B73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.6 96.4 GSM205370 B73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.1 95.9 GSM205368 B73xMo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.0 95.8 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8 95.5 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.6 95.2 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.6 95.2 GSM202318 B73xMo17 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.4 94.9 GSM205372 B73xMo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.3 94.7 GSM202310 B73 19 day after pollination embryo tissue, biological replicate 1 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3 94.7 GSM202324 Mo17xB73 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 2e-159 561 Zm.14437.1.S1_at CA403877 RNA binding protein - 3e+0 At5g66010 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 3e-1 36 Zm.5565.1.S2_at CF631185 hypothetical protein LOC100194102 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.01 3e-1 36 Zm.5565.1.S1_at D45402.1 cysteine protease1 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.02 3e-1 36 Zm.14824.1.S1_at AJ430693.1 hypothetical protein LOC100217247 /// m26 protein - 5e-1 At2g16600 ROC3 C.G. S.X.
0.01 1e+0 34 Zm.3190.1.A1_at AW600630 - - 2e-17 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) C.G. S.X.
0.01 1e+0 34 Zm.1459.1.S1_at CK368035 cold acclimation protein COR413-PM1 - 2e-1 At4g37220 stress-responsive protein, putative C.G. S.X.
0.02 4e+0 32 ZmAffx.122.1.A1_at AI665696 hypothetical protein LOC100217096 - 8e-1 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) C.G. S.X.
0.02 4e+0 32 ZmAffx.122.1.S1_at AI665696 Hypothetical protein LOC100217096 - 8e-1 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) C.G. S.X.
0.01 4e+0 32 Zm.6419.1.A1_at CF635415 xyloglucan endotransglucosylase/hydrolase - 3e-6 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e+0 34 Arabidopsis thaliana At5g66010 836731 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOPF - - - C.G. S.X.
0.02 9e-1 36 Glycine max HgAffx.23994.1.S1_at BF013855 - - 2e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) C.G. S.X.
0.43 4e-99 361 Hordeum vulgare Contig2607_at Contig2607 - - 4e-4 At5g66010 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.46 1e-114 414 Oryza sativa Os.22510.1.A1_at - - - 0 C.G. S.X.
0.05 6e-2 40 Populus trichocarpa Ptp.5457.1.S1_at DN490352 hypothetical protein - 7e-6 At3g20890 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.35 3e-49 196 Triticum aestivum TaAffx.33970.1.S1_at CD890505 - - 2e+0 At3g09910 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) C.G. S.X.
0.03 8e-7 54 Vitis vinifera 1607477_at CB968954 hypothetical protein LOC100247294 - 2e-13 At5g66010 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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