CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.14407.2.S1_at

Gene name hypothetical protein LOC100272648

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.14407.2.S1_at AW424519 hypothetical protein LOC100272648 - 3e-140 At1g56070 LOS1 S.X. H.G.
0.67 85.8 Zm.6562.2.A1_a_at CK347763 plasma membrane associated protein - 6e+0 At5g56990 - S.X. H.G.
0.50 65.7 Zm.4878.1.A1_at AW288995 hsc70-interacting protein - 6e-8 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) S.X. H.G.
0.44 55.7 Zm.12236.1.A1_at CA830514 hypothetical protein LOC100194199 - 5e+0 At3g13970 APG12B (AUTOPHAGY 12 B) S.X. H.G.
0.40 48.5 Zm.9237.1.A1_at BM350875 - - 4e-1 At3g07750 3' exoribonuclease family domain 1-containing protein S.X. H.G.
0.23 18.6 Zm.4823.1.A1_at CD999070 - - 4e-23 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 94.7 GSM205423 B73xMo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.0 94.0 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.9 93.8 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.8 93.5 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.6 92.9 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.5 92.6 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4 92.2 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4 92.2 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4 92.2 GSM205427 Mo17xB73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4 92.2 GSM205366 B73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 0 1049 Zm.14407.1.A1_at CF012666 elongation factor 2 - 6e-60 At1g56070 LOS1 C.G. S.X.
0.07 1e-45 184 Zm.14407.3.A1_at AY111947.1 - - 4e-12 At1g56070 LOS1 C.G. S.X.
0.07 1e-45 184 Zm.14407.3.S1_at AY111947.1 - - 4e-12 At1g56070 LOS1 C.G. S.X.
0.01 4e-2 40 ZmAffx.1168.1.S1_s_at AW600602 early fruit mRNA - 2e-1 At5g16380 unknown protein C.G. S.X.
0.01 4e-2 40 ZmAffx.1161.1.A1_at AW438287 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase - 5e-2 At5g51010 rubredoxin family protein C.G. S.X.
0.01 4e-2 40 ZmAffx.1161.1.S1_at AW438287 - - 5e-2 At5g51010 rubredoxin family protein C.G. S.X.
0.01 4e-2 40 ZmAffx.1151.1.A1_at AW424605 anaphase-promoting complex subunit 10 - 3e+0 At3g43431 unknown protein C.G. S.X.
0.01 4e-2 40 ZmAffx.1151.1.S1_at AW424605 - - 3e+0 At3g43431 unknown protein C.G. S.X.
0.01 4e-2 40 ZmAffx.1160.1.A1_at AW438281 - - 1e+1 At1g24060 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 3e-140 500 Arabidopsis thaliana At1g56070 842058 LOS1 encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. - - - C.G. S.X.
0.66 7e-170 599 Glycine max Gma.10782.1.S1_at CD410674 - - 0 At1g56070 LOS1 C.G. S.X.
0.75 0 2456 Hordeum vulgare Contig901_x_at Contig901 - - 0 At1g56070 LOS1 C.G. S.X.
0.75 0 2623 Oryza sativa Os02g0519900 AK100313.1 - Elongation factor EF-2 (Fragment) 0 At1g56070 LOS1 C.G. S.X.
0.68 0 862 Populus trichocarpa PtpAffx.205282.1.S1_at pmrna10471 hypothetical protein - 0 At1g56070 LOS1 C.G. S.X.
0.71 0 2292 Triticum aestivum Ta.28016.1.S1_x_at BJ250194 - - 0 At1g56070 LOS1 C.G. S.X.
0.38 0 672 Vitis vinifera 1615787_at BQ797242 similar to elongation factor 2 - 2e-168 At1g56070 LOS1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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