Gene omics information

Query gene ID	Zm.144.2.A1_at
Gene name	Metallothionein2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.144.2.A1_at	BE123186	Metallothionein2	-	1e+1	At3g58370	K-Cl Co-transporter type 1 protein-related / KCC1 protein-related	S.X.	H.G.	Please select
0.55	71.6	Zm.5132.1.A1_at	AY105555.1	calcium lipid binding protein-like	-	7e-1	At1g15320	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.13528.1.A1_at	CO529656	hypothetical protein LOC100216925	-	4e-1	At2g18860	syntaxin family protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1053.1.A1_at	AI881846	-	-	3e+0	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	S.X.	H.G.	Please select
0.33	36.0	Zm.1546.1.A1_at	BM348327	hypothetical protein LOC100273379	-	6e-22	At3g20390	endoribonuclease L-PSP family protein	S.X.	H.G.	Please select
0.17	10.6	Zm.9217.2.S1_at	AI665633	-	-	2e-1	At4g22850	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	99.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.8	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	3e-165	579	Zm.144.1.S1_x_at	U10696.1	metallothionein2	-	2e+1	At5g38344	transmembrane receptor	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.17195.1.S1_at	CK144512	-	-	1e+1	At5g45680	FK506-binding protein 1 (FKBP13)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.199.1.S1_s_at	AB008464.1	sucrose transporter1	-	2e-2	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.9822.1.A1_at	BM348325	-	-	4e+0	At2g44700	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.8944.1.S1_at	CO520184	stem-specific protein TSJT1	-	6e-1	At5g19140	AILP1	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.18467.1.A1_at	AY107639.1	-	-	5e+0	At5g35920	CYP79A4P	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.18467.1.S1_at	AY107639.1	-	-	5e+0	At5g35920	CYP79A4P	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.18363.1.S1_at	CO529135	hypothetical protein LOC100194297	-	8e-13	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At3g58370	825006	K-Cl Co-transporter type 1 protein-related / KCC1 protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.15400.1.S1_at	BU964586	-	-	5e-6	At3g28345	ABC transporter family protein	C.G.	S.X.	Please select
0.39	5e-25	113	Hordeum vulgare	Contig1432_at	Contig1432	-	-	4e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.9495.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+1	30	Populus trichocarpa	PtpAffx.219189.1.S1_at	pmrna35039	hypothetical protein	-	2e+0	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	4e-89	327	Triticum aestivum	Ta.26541.1.S1_at	CD491171	-	-	1e+0	At3g01580	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1613608_at	CB916843	-	-	2e-8	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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