Gene omics information

Query gene ID	Zm.14396.1.S1_at
Gene name	photosystem I subunit d1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.14396.1.S1_at	AF147726.1	photosystem I subunit d1	-	1e-3	At1g03130	PSAD-2 (photosystem I subunit D-2)	S.X.	H.G.	Please select
0.67	85.8	Zm.15432.1.S1_at	CA401222	-	-	9e+0	At5g02080	DNA/panthothenate metabolism flavoprotein family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.3952.1.S1_at	AW155692	-	-	1e-4	At2g19950	GC1 (Golgin Candidate 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.19061.1.A1_at	CO532046	hypothetical protein LOC100193436	-	5e+0	At3g62370	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.33.1.S1_s_at	M12144.1	alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein	-	7e-1	At1g18265	unknown protein	S.X.	H.G.	Please select
0.14	7.7	Zm.16488.1.A1_at	CD440410	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4	-	7e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.5	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM258202	B14a 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
5.5	97.1	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
5.4	97.0	GSM258199	B14a 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
5.1	96.8	GSM258190	B37 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.1	96.8	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM258191	B73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
4.9	96.7	GSM258200	W22 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
4.9	96.7	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM258203	W22 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-3	40	Zm.470.1.A1_at	AF145755.1	THA4	-	2e+0	At5g28750	thylakoid assembly protein, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.9418.1.S1_at	AF493799.1	DREB-like protein	-	4e-2	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.649.1.S1_at	AY032604.1	ADP-glucose pyrophosphorylase small subunit	-	5e-43	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.6203.1.A1_x_at	CN844626	putative glutathione peroxidase	-	8e-50	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.535.1.S1_at	AF318579.1	hypothetical LOC542493	-	7e-2	At2g20570	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.509.1.S1_at	AF096871.1	calcium pump1	-	3e-11	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.301.2.A1_x_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.17696.1.A1_at	BM073027	-	-	2e-3	At4g31470	pathogenesis-related protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-3	44	Arabidopsis thaliana	At1g03130	838400	PSAD-2 (photosystem I subunit D-2)	Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	3e-14	79	Glycine max	Gma.10852.1.S1_a_at	CD414600	photosystem I subunit PsaD	-	3e-33	At4g02770	PSAD-1 (photosystem I subunit D-1)	C.G.	S.X.	Please select
0.38	9e-108	389	Hordeum vulgare	Contig4015_at	Contig4015	-	-	2e-3	At4g02770	PSAD-1 (photosystem I subunit D-1)	C.G.	S.X.	Please select
0.17	2e-99	363	Oryza sativa	Os08g0560900	AK072473.1	-	Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D)	2e-6	At4g02770	PSAD-1 (photosystem I subunit D-1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	5e-16	85	Populus trichocarpa	PtpAffx.71066.5.A1_s_at	CV237799	hypothetical protein	-	1e-16	At4g02770	PSAD-1 (photosystem I subunit D-1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	2e-107	389	Triticum aestivum	Ta.24304.2.S1_a_at	CK212788	-	-	3e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	C.G.	S.X.	Please select
0.14	1e-22	105	Vitis vinifera	1611733_s_at	BQ797982	hypothetical protein LOC100240928	-	2e-12	At1g03130	PSAD-2 (photosystem I subunit D-2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage