Gene omics information

Query gene ID	Zm.14290.1.S1_at
Gene name	hypothetical protein LOC100278212
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.14290.1.S1_at	CD998001	hypothetical protein LOC100278212	-	2e-9	At3g51610	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.13857.1.S1_s_at	AF439726.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase /// methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	3e-13	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select
0.29	28.1	Zm.7003.1.A1_at	BM380958	plastoquinol-plastocyanin reductase	-	7e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.1322.1.A1_at	AI737263	hypothetical protein LOC100279212	-	5e-31	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	S.X.	H.G.	Please select
0.22	16.9	Zm.5290.2.S1_at	AY104608.1	-	-	5e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	S.X.	H.G.	Please select
0.20	14.2	Zm.2758.1.A1_at	AW067110	-	-	2e-6	At2g25730	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	96.7	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.6	96.4	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.5	96.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.2	96.0	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.2	96.0	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.1	95.9	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8	95.5	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.7	95.4	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Zm.3926.1.A1_at	BU050394	hypothetical protein LOC100278398	-	2e+0	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.3583.1.A1_at	AY103682.1	hypothetical protein LOC100191673	-	4e-19	At4g30600	signal recognition particle receptor alpha subunit family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.2442.1.A1_at	BG841393	hypothetical protein LOC100193531	-	2e-1	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.11883.1.A1_at	CO524346	hypothetical protein LOC100193714	-	2e-9	At5g66090	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.10075.1.A1_at	CF624342	-	-	2e+0	At5g55135	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9661.1.A1_at	BM335503	-	-	4e+0	At5g04470	SIM (SIAMESE)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.659.1.S1_at	AF366297.1	hypothetical protein LOC100191749	-	4e-3	At1g69500	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.584.3.S1_a_at	M73029.1	pericarp color1	-	3e-8	At4g38620	MYB4	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5851.14.A1_at	BE453943	-	-	9e-2	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-9	63	Arabidopsis thaliana	At3g51610	824324	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-12	73	Glycine max	GmaAffx.92865.1.S1_at	CF806079	-	-	6e-6	At3g51610	unknown protein	C.G.	S.X.	Please select
0.54	0	636	Hordeum vulgare	Contig7658_at	Contig7658	-	-	4e-8	At3g51610	unknown protein	C.G.	S.X.	Please select
0.45	2e-177	623	Oryza sativa	Os05g0168400	CR283498	-	Conserved hypothetical protein	3e-1	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	8e-10	65	Populus trichocarpa	PtpAffx.213720.1.S1_at	pmrna26774	hypothetical protein	-	9e-9	At3g51610	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	4e-156	551	Triticum aestivum	TaAffx.86629.1.S1_at	AJ612548	-	-	1e-5	At3g51610	unknown protein	C.G.	S.X.	Please select
0.07	2e-4	46	Vitis vinifera	1619129_at	CF215433	hypothetical protein LOC100249981	-	4e-3	At3g51610	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage