Gene omics information

Query gene ID	Zm.14275.1.A1_at
Gene name	verprolin
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.14275.1.A1_at	AY108619.1	verprolin	-	1e+0	At1g35435	-	S.X.	H.G.	Please select
0.68	86.1	Zm.4745.1.A1_at	AI739741	hypothetical protein LOC100194119	-	1e-3	At3g55350	unknown protein	S.X.	H.G.	Please select
0.58	75.1	Zm.3001.1.A1_at	CK826660	-	-	7e-1	At3g18760	ribosomal protein S6 family protein	S.X.	H.G.	Please select
0.54	69.8	Zm.1841.1.A1_at	CK828096	hypothetical protein LOC100273189	-	1e+1	At5g42470	-	S.X.	H.G.	Please select
0.46	58.4	Zm.4768.1.A1_at	AY107116.1	hypothetical protein LOC100192636	-	5e-30	At1g64550	ATGCN3	S.X.	H.G.	Please select
0.46	58.4	Zm.4595.1.A1_at	AI737265	-	-	4e-1	At1g30190	unknown protein	S.X.	H.G.	Please select
0.45	56.4	Zm.4592.1.A1_at	BM348651	hypothetical protein LOC100275868	-	8e+0	At5g39690	ANAC093 (Arabidopsis NAC domain containing protein 93)	S.X.	H.G.	Please select
0.38	44.2	Zm.2870.1.A1_at	AW076473	-	-	1e-19	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	S.X.	H.G.	Please select
0.36	41.3	Zm.6630.1.A1_a_at	CA402660	hypothetical protein LOC100193888 /// hypothetical protein LOC100194042 /// hypothetical protein LOC100276114	-	1e-22	At1g80490	TPR1 (TOPLESS-RELATED 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.6	99.9	GSM258174	B84 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
32.9	99.8	GSM258192	B84 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
27.3	99.7	GSM258183	B84 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
14.4	98.9	GSM258196	B84xB73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
13.1	98.7	GSM258178	B84xB73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
12.6	98.7	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM258187	B84xB73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.9	97.3	GSM202414	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
5.7	97.2	GSM202282	B73 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
5.2	96.9	GSM202413	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Zm.18478.1.S1_at	CO521952	-	-	1e+1	At4g16400	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.12127.1.A1_at	CO519754	-	-	4e+0	At1g62333	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.3536.1.A1_at	BM340706	glucan endo-1,3-beta-glucosidase 4	-	3e+0	At2g18050	HIS1-3 (HISTONE H1-3)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.2407.1.A1_a_at	BM073394	hypothetical protein LOC100191492	-	6e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.18132.1.S1_at	CN844872	-	-	2e-1	At5g58900	myb family transcription factor	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.17597.2.A1_s_at	CK347323	ATP synthase3 /// hypothetical protein LOC100191627 /// ATP synthase delta chain	-	8e+0	At5g47030	ATP synthase delta' chain, mitochondrial	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.16934.1.A1_at	AY108912.1	transcriptional regulatory protein algP	-	3e-1	At4g03580	-	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.1133.1.S1_at	BM382336	hypothetical protein LOC100191400	-	6e-8	At5g07030	aspartic-type endopeptidase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At1g35435	3766944	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.58230.1.S1_s_at	BE583535	-	-	3e+0	At4g11870	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Hordeum vulgare	Contig22860_at	Contig22860	-	-	4e-1	At1g67030	ZFP6 (ZINC FINGER PROTEIN 6)	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	OsAffx.972.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.220325.1.S1_at	pmrna36696	hypothetical protein	-	1e+1	At5g48550	F-box family protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-2	40	Triticum aestivum	Ta.25574.2.S1_at	CA646347	-	-	4e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1614076_at	CB346355	hypothetical protein LOC100254333	-	2e-1	At2g30560	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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