Gene omics information

Query gene ID	Zm.14107.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.14107.2.A1_at	AI770963	-	-	8e-1	At3g56880	VQ motif-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.15486.1.A1_at	BM498425	-	-	6e-11	At1g71270	POK (POKY POLLEN TUBE)	S.X.	H.G.	Please select
0.36	41.3	Zm.12535.1.S1_at	AY105384.1	hypothetical protein LOC100278440	-	9e+0	At5g01390	DNAJ heat shock protein, putative	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.566.1.A1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.13757.1.S1_at	AY105827.1	-	-	1e-1	At1g70590	F-box family protein	S.X.	H.G.	Please select
0.17	10.6	Zm.4359.2.A1_x_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.0	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.4	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.9	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.4	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	Zm.14107.2.S1_a_at	AI770963	peroxin Pex14	-	8e-1	At3g56880	VQ motif-containing protein	C.G.	S.X.	Please select
0.28	4e-164	575	Zm.14107.1.S1_at	CK786818	peroxin Pex14	-	9e-1	At4g22250	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	ZmAffx.1300.1.S1_at	40794996-28	-	-	0	Atmg00180	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.5629.1.A1_at	AW052888	-	-	4e-2	At3g12640	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.2658.1.A1_at	CK348010	-	-	3e-2	At4g15840	protein binding	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.2358.1.A1_at	BG316973	chlorophyllide a oxygenase	-	2e+0	At4g16240	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5274.1.S1_at	CD990782	triose phosphate/phosphate translocator, non-green plastid,chloroplast	-	4e-18	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.398.1.S1_at	AF384032.1	histone deacetylase HDA101 /// RPD3 histone deacetylase homolog	-	1e-30	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.383.1.S1_s_at	AF023165.1	leucine-rich repeat transmembrane protein kinase 2	-	1e-22	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At3g56880	824855	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.7838.3.S1_at	CA800410	-	-	8e-4	At5g66460	(1-4)-beta-mannan endohydrolase, putative	C.G.	S.X.	Please select
0.05	7e-15	79	Hordeum vulgare	Contig5521_s_at	Contig5521	-	-	6e-2	At5g62810	PEX14	C.G.	S.X.	Please select
0.12	3e-42	173	Oryza sativa	Os05g0101200	AY262026.1	-	Peroxisomal membrane anchor protein (Pex14p)domain containing protein	1e+0	At5g61660	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.58750.1.A1_s_at	CK091825	hypothetical protein	-	1e-26	At5g62600	transportin-SR-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.113084.1.S1_at	CA618256	-	-	2e+0	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1619112_at	CF514730	hypothetical protein LOC100246349	-	1e+1	At5g01015	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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