Gene omics information

Query gene ID	Zm.14040.1.A1_at
Gene name	C-4 methylsterol oxidase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.14040.1.A1_at	CF051487	C-4 methylsterol oxidase	-	6e-20	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	S.X.	H.G.	Please select
0.91	99.0	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	S.X.	H.G.	Please select
0.80	94.0	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.77	92.1	Zm.3144.1.S1_at	CD441537	nucleic acid binding protein	-	3e+0	At4g20420	tapetum-specific protein-related	S.X.	H.G.	Please select
0.77	92.1	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.60	77.8	Zm.3772.1.S1_at	CF010220	Zea m 1 allergen	-	6e-4	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	98.3	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.5	98.3	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.1	98.2	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.1	98.2	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.8	98.1	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.3	98.0	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.3	98.0	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.2	98.0	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.8	97.9	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.3	97.8	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-16	85	Zm.16289.1.A1_at	BM337131	hypothetical protein LOC100217119	-	2e-2	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	C.G.	S.X.	Please select
0.02	3e-4	46	Zm.17962.1.A1_at	CK826755	-	-	6e+0	At1g24600	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.3630.1.A1_at	BM380179	-	-	7e+0	At5g15000	-	C.G.	S.X.	Please select
0.01	5e-3	42	Zm.17178.1.A1_at	AB112936.1	plastidic 2-oxoglutarate/malate transporter	-	3e-10	At5g12860	DiT1 (dicarboxylate transporter 1)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.4679.1.S1_at	AI737934	pre-rRNA-processing protein TSR2	-	2e+0	At2g30766	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.3368.1.A1_at	AY107360.1	hypothetical protein LOC100272602	-	4e-31	At1g15500	ATNTT2	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.19155.1.S1_at	CA401905	calcium-dependent protein kinase, isoform 2	-	9e-29	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.14133.1.A1_at	CF633639	gibberellin receptor GID1L2	-	7e+0	At4g03113	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.5581.1.S1_at	AF143447.1	rough sheath2	-	1e-15	At2g37630	AS1 (ASYMMETRIC LEAVES 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	6e-20	99	Arabidopsis thaliana	At4g22756	828374	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	6e-27	123	Glycine max	Gma.3046.1.S1_at	BQ741319	-	-	5e-20	At4g22753	SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)	C.G.	S.X.	Please select
0.49	1e-176	619	Hordeum vulgare	Contig8151_at	Contig8151	-	-	1e-20	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	C.G.	S.X.	Please select
0.54	0	688	Oryza sativa	Os10g0545200	AK061779.1	-	Sterol desaturase family protein	1e-8	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	7e-14	79	Populus trichocarpa	PtpAffx.61626.1.S1_a_at	BP931647	hypothetical protein	-	1e-35	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	9e-161	567	Triticum aestivum	Ta.21211.1.S1_at	CA603347	-	-	3e-21	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	C.G.	S.X.	Please select
0.02	5e-2	38	Vitis vinifera	1621914_s_at	CF216047	hypothetical protein LOC100249014	-	2e-5	At5g50740	metal ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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