Gene omics information

Query gene ID	Zm.14036.1.S1_at
Gene name	embryo specific protein1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.14036.1.S1_at	X55388.1	embryo specific protein1	-	3e-2	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.1.1.S1_s_at	AY722707.1	hypothetical LOC542518	-	5e-51	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	S.X.	H.G.	Please select
0.50	65.7	Zm.12387.1.S1_at	AW000286	-	-	2e+1	Atmg01300	-	S.X.	H.G.	Please select
0.44	55.7	Zm.7080.3.A1_at	BM382181	hypothetical protein LOC100192855	-	2e-18	At1g09690	60S ribosomal protein L21 (RPL21C)	S.X.	H.G.	Please select
0.39	45.6	Zm.5451.1.S1_at	AI621979	-	-	8e-4	At4g36970	remorin family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13494.1.A1_at	AY108782.1	-	-	4e-1	At2g17300	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
88.7	100.0	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
58.2	100.0	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
44.3	100.0	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
31.9	99.8	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.6	97.6	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.4	97.5	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.6	96.4	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.4	96.2	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.7	95.4	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	7e-32	137	Zm.1.1.A1_at	M90554.1	embryo specific protein5	-	7e-3	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.495.1.A1_at	AF236369.1	prohibitin2	-	6e-1	At5g14300	ATPHB5 (PROHIBITIN 5)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.17632.1.A1_at	CK370036	-	-	7e+0	At4g16215	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.13870.1.S1_at	AY237128.1	myb-related protein c1-I-2K1	-	4e-4	At5g35550	TT2 (TRANSPARENT TESTA 2)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.10553.1.A1_at	CD441187	-	-	4e+0	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.451.1.A1_at	AI677139	-	-	8e-1	At5g66740	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.451.1.S1_at	AI677139	-	-	8e-1	At5g66740	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5642.1.A1_at	BQ539203	seed maturation protein	-	6e-1	At3g10260	reticulon family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4359.2.A1_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-2	40	Arabidopsis thaliana	At2g40170	818608	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.60821.1.A1_at	BU549068	-	-	9e-32	At5g55280	FTSZ1-1	C.G.	S.X.	Please select
0.28	1e-76	286	Hordeum vulgare	Contig1832_x_at	Contig1832	-	-	6e-3	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.24	4e-52	206	Oryza sativa	Os05g0349800	AK063677.1	-	Embryonic abundant protein 1	7e-3	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	6e-1	36	Populus trichocarpa	PtpAffx.209274.1.S1_s_at	pmrna18321	hypothetical protein	-	2e-3	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	3e-76	286	Triticum aestivum	Ta.2798.1.S1_x_at	BJ290016	Em protein (AA 1-93)	-	1e+0	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1620890_at	CB918837	hypothetical protein LOC100263962	-	2e-1	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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