Gene omics information

Query gene ID	Zm.1402.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.1402.1.S1_at	BF729248	-	-	4e+0	At1g29040	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.4338.3.S1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.4350.1.A1_at	AW091239	-	-	1e+0	At5g49334	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.13325.1.S1_at	BQ279643	-	-	3e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	S.X.	H.G.	Please select
0.37	42.3	Zm.13484.1.S1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	S.X.	H.G.	Please select
0.32	33.4	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.1	99.1	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
13.3	98.8	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
10.1	98.4	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
8.7	98.1	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.5	98.1	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
8.5	98.1	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
7.0	97.7	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.8	97.6	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.7	97.6	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.6	97.6	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-2	38	Zm.8194.1.A1_at	BM380105	hypothetical protein LOC100274820 /// hypothetical protein LOC100276986	-	7e+0	At5g04750	F1F0-ATPase inhibitor protein, putative	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.18682.1.A1_at	CO521878	hypothetical protein LOC100216626	-	1e+0	At1g17780	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.18682.1.A1_s_at	CO521878	hypothetical protein LOC100216626	-	1e+0	At1g17780	unknown protein	C.G.	S.X.	Please select
0.05	4e-1	34	ZmAffx.31.1.S1_at	AI657417	-	-	8e-1	At3g55880	unknown protein	C.G.	S.X.	Please select
0.05	4e-1	34	ZmAffx.31.1.A1_at	AI657417	-	-	8e-1	At3g55880	unknown protein	C.G.	S.X.	Please select
0.05	4e-1	34	ZmAffx.1069.1.A1_at	AI941949	RING-H2 finger protein ATL2K	-	6e+0	At5g12380	annexin, putative	C.G.	S.X.	Please select
0.05	4e-1	34	ZmAffx.1069.1.S1_at	AI941949	-	-	6e+0	At5g12380	annexin, putative	C.G.	S.X.	Please select
0.04	4e-1	34	Zm.7925.1.A1_at	BM080435	-	-	1e+0	At1g58070	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At1g29040	839778	unknown protein	F:unknown;P:unknown;C:chloroplast, vacuole;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	PsAffx.C954000001_at	PsAffx.C954000001	-	-	1e+0	At2g44520	COX10 (cytochrome c oxidase 10)	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig4622_s_at	Contig4622	-	-	2e+0	At4g13615	four F5 protein-related / 4F5 protein-related	C.G.	S.X.	Please select
0.06	7e-3	42	Oryza sativa	OsAffx.25836.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.218359.1.S1_at	pmrna33938	hypothetical protein	-	4e+0	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	Ta.3519.1.S1_at	BJ212619	-	-	5e+0	At5g44450	methyltransferase	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1619910_at	CF405078	-	-	2e-1	At3g27410	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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