CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.13940.1.S1_at

Gene name hypothetical protein LOC100193246

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.13940.1.S1_at AI677337 hypothetical protein LOC100193246 - 1e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.77 92.1 Zm.2763.1.S1_at AW067129 hypothetical protein LOC100191545 - 9e-7 At1g19710 glycosyl transferase family 1 protein S.X. H.G.
0.60 77.8 Zm.6275.1.S1_a_at AF540907.1 benzoxazin6 - 7e-1 At1g06640 2-oxoglutarate-dependent dioxygenase, putative S.X. H.G.
0.57 75.1 ZmAffx.774.1.A1_at AI746198 hypothetical protein LOC100279501 - 2e+0 At2g41000 heat shock protein binding S.X. H.G.
0.50 65.7 Zm.4848.2.S1_a_at AI770366 SIR2-like histone deacetylase - 2e-1 At5g55760 SRT1 (sirtuin 1) S.X. H.G.
0.40 48.5 Zm.13228.1.S1_at CA452580 LHT1 - 5e+0 At4g17585 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.0 98.8 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
13.5 98.8 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.1 98.4 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.7 98.1 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.2 98.0 GSM205427 Mo17xB73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
8.1 98.0 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.9 97.9 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.2 97.8 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.9 97.7 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.8 97.6 GSM205423 B73xMo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 7e-90 329 Zm.5314.2.A1_at AW179427 - - 6e-4 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.03 1e-1 36 Zm.3444.1.A1_at AI948251 - - 4e+0 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.02 1e-1 36 Zm.2911.1.A1_at AW091209 Hypothetical protein LOC100193903 - 9e-1 At1g73770 unknown protein C.G. S.X.
0.01 1e-1 36 Zm.2484.1.A1_at AW062033 hypothetical protein LOC100274918 - 3e+0 At5g65050 AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31) C.G. S.X.
0.01 6e-1 34 Zm.841.1.A1_at AY110353.1 placental protein 11 - 4e+0 At4g39260 GR-RBP8 C.G. S.X.
0.01 2e+0 32 Zm.15470.1.S1_at CD441030 MAK16-like protein RBM13 - 5e-2 At4g21610 LOL2 (LSD ONE LIKE 2) C.G. S.X.
0.02 2e+0 32 Zm.130.1.S1_at AB014475.1 root cap-specific glycine-rich protein - 4e-1 At1g61750 - C.G. S.X.
0.02 9e+0 30 Zm.9159.1.A1_at BM340817 - - 4e-1 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.01 9e+0 30 Zm.5624.1.A1_at CO534105 hypothetical protein LOC100279553 - 4e-29 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At4g00810 828004 60S acidic ribosomal protein P1 (RPP1B) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.C99000006_at PsAffx.C99000006 - - 1e+1 At5g56990 - C.G. S.X.
0.35 6e-23 107 Hordeum vulgare HM02O03r_s_at HM02O03r - - 6e-2 At3g60540 sec61beta family protein C.G. S.X.
0.34 3e-15 83 Oryza sativa Os12g0173300 9640.m00678 - TCP transcription factor family protein 1e-8 At2g45070 SEC61 BETA C.G. S.X.
0.04 5e-1 36 Populus trichocarpa PtpAffx.224008.1.S1_at pmrna42238 hypothetical protein - 2e-1 At2g37600 60S ribosomal protein L36 (RPL36A) C.G. S.X.
0.36 1e-22 107 Triticum aestivum Ta.21327.3.A1_x_at CA690365 - - 4e-9 At2g45070 SEC61 BETA C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1621383_at CD718971 - - 9e-8 At2g45070 SEC61 BETA C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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