Gene omics information

Query gene ID	Zm.13932.1.S1_x_at
Gene name	phosphoenolpyruvate carboxylase /// phosphoenolpyruvate carboxylase1 /// phosphoenolpyruvate carboxylase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	Zm.13932.1.S1_x_at	X63871.1	phosphoenolpyruvate carboxylase /// phosphoenolpyruvate carboxylase1 /// phosphoenolpyruvate carboxylase	-	3e-4	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	S.X.	H.G.	Please select
0.88	96.7	Zm.6357.1.S1_at	AY103601.1	catalase1	-	8e-85	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.80	94.0	Zm.6351.1.S1_at	AY105055.1	hypothetical protein LOC100277708	-	5e-1	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.74	90.3	Zm.1207.1.A1_at	CO525598	growth-regulating factor 11-like	-	6e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.123.1.S1_at	AI665878	-	-	8e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.1108.1.A1_at	AW216343	hypothetical protein LOC100191835	-	3e+0	At4g12810	F-box family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5897.1.A1_at	CA404128	hypothetical protein LOC100193663	-	9e-38	At3g47520	MDH (MALATE DEHYDROGENASE)	S.X.	H.G.	Please select
0.46	58.4	Zm.15578.1.A1_at	CD448284	-	-	8e+0	At5g61310	cytochrome c oxidase subunit Vc, putative / COX5C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.7	99.4	GSM258205	B14a 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
14.1	98.8	GSM258192	B84 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
13.0	98.7	GSM258174	B84 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
11.6	98.6	GSM258199	B14a 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
10.2	98.4	GSM202401	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
9.3	98.2	GSM258196	B84xB73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.3	97.8	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.1	97.7	GSM202405	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep5	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.0	97.7	GSM202408	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
6.5	97.5	GSM202409	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	1e-100	363	Zm.13932.1.A1_at	X63871.1	phosphoenolpyruvate carboxylase	-	3e-4	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	C.G.	S.X.	Please select
0.10	3e-67	252	Zm.2433.1.S1_at	AY103747.1	hypothetical protein LOC100191762	-	3e-14	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	C.G.	S.X.	Please select
0.04	3e-9	59	Zm.800.1.S1_at	BG319937	phosphoenolpyruvate carboxylase	-	8e-55	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	C.G.	S.X.	Please select
0.04	2e-6	50	Zm.167.1.A1_at	CF632910	phosphoenolpyruvate carboxylase	-	1e-50	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	C.G.	S.X.	Please select
0.03	1e-1	34	Zm.12235.1.A1_at	CF972364	-	-	7e+0	At5g62980	dihydroneopterin aldolase, putative	C.G.	S.X.	Please select
0.03	1e-1	34	Zm.12235.1.S1_at	CF972364	-	-	7e+0	At5g62980	dihydroneopterin aldolase, putative	C.G.	S.X.	Please select
0.01	6e-1	32	Zm.458.1.S1_at	AF047490.1	zeta carotene desaturase candidate	-	1e-12	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please select
0.02	6e-1	32	Zm.4321.1.S1_at	AI855098	hypothetical protein LOC100191344	-	2e-1	At3g51600	LTP5 (Lipid transfer protein 5)	C.G.	S.X.	Please select
0.01	2e+0	30	Zm.91.1.S1_at	AY111773.1	hypothetical protein LOC100192631	-	4e+0	At4g23895	pleckstrin homology (PH) domain-containing protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-4	44	Arabidopsis thaliana	At3g42628	823279	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	F:phosphoenolpyruvate carboxylase activity;P:tricarboxylic acid cycle;C:cytosol;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	32	Glycine max	PsAffx.psMA008xI02f_at	PsAffx.psMA008xI02f	-	-	3e+0	At1g73325	trypsin and protease inhibitor family protein / Kunitz family protein	C.G.	S.X.	Please select
0.03	3e+0	30	Hordeum vulgare	Contig22231_at	Contig22231	-	-	1e+0	At2g47840	tic20 protein-related	C.G.	S.X.	Please select
0.06	2e-7	56	Oryza sativa	Os02g0244700	AF271995.1	-	Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31)(PEPCase 1) (CP21)	5e-53	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	30	Populus trichocarpa	PtpAffx.4365.3.A1_at	CV266255	hypothetical protein	-	1e-3	At3g61440	CYSC1 (CYSTEINE SYNTHASE C1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	1e-10	65	Triticum aestivum	TaAffx.115613.2.S1_s_at	CA659260	-	-	1e+0	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.06	2e+0	30	Vitis vinifera	1613954_at	BQ792886	hypothetical protein LOC100241102	-	3e+0	At4g37240	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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