Gene omics information

Query gene ID	Zm.13931.1.A1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.13931.1.A1_x_at	Z35302.1	-	-	8e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	S.X.	H.G.	Please select
0.83	95.6	Zm.3283.2.A1_a_at	BM335982	hypothetical protein LOC100192072	-	2e+0	At3g46110	unknown protein	S.X.	H.G.	Please select
0.31	31.6	Zm.3930.1.S1_at	BQ538158	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	S.X.	H.G.	Please select
0.27	24.6	Zm.9285.1.A1_at	BM339972	disease resistance response protein 206	-	6e+0	At5g46874	-	S.X.	H.G.	Please select
0.26	22.7	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	S.X.	H.G.	Please select
0.25	21.3	Zm.17512.1.S1_at	CF057479	hypothetical protein LOC100192897	-	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.2	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	1e-65	246	Zm.13931.1.S1_x_at	Z35302.1	-	-	8e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	C.G.	S.X.	Please select
0.93	4e-44	174	Zm.13930.1.S1_x_at	Z35298.1	-	-	2e-1	At4g32860	unknown protein	C.G.	S.X.	Please select
0.93	4e-44	174	Zm.13930.1.A1_x_at	Z35298.1	-	-	2e-1	At4g32860	unknown protein	C.G.	S.X.	Please select
0.17	5e-28	121	Zm.2741.1.A1_at	CB603857	-	-	2e+0	At4g13140	-	C.G.	S.X.	Please select
0.20	5e-25	111	Zm.6734.2.S1_x_at	CD439610	-	-	2e+0	At4g13140	-	C.G.	S.X.	Please select
0.20	5e-25	111	Zm.6734.2.A1_at	CD439610	-	-	2e+0	At4g13140	-	C.G.	S.X.	Please select
0.20	5e-25	111	Zm.14556.1.A1_a_at	BM079777	-	-	1e+0	At4g13140	-	C.G.	S.X.	Please select
0.68	5e-25	111	Zm.13921.1.S1_x_at	Z35300.1	-	-	4e+0	At2g07340	prefoldin-related KE2 family protein	C.G.	S.X.	Please select
0.23	2e-24	109	Zm.10012.1.S1_at	CF635852	-	-	1e+0	At4g13140	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-1	32	Arabidopsis thaliana	At1g09630	837490	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	2e-14	77	Glycine max	Gma.16421.1.S1_at	BI969187	-	-	5e+0	At3g61028	unknown protein	C.G.	S.X.	Please select
0.23	2e-24	109	Hordeum vulgare	Contig18806_at	Contig18806	-	-	5e+0	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	C.G.	S.X.	Please select
0.20	2e-28	125	Oryza sativa	Os.22465.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-17	87	Populus trichocarpa	PtpAffx.7611.1.A1_a_at	CV283059	hypothetical protein	-	4e+0	At4g26210	mitochondrial ATP synthase g subunit family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	3e-19	93	Triticum aestivum	TaAffx.50907.2.S1_at	BJ267496	-	-	4e+0	At4g32860	unknown protein	C.G.	S.X.	Please select
0.30	2e-26	115	Vitis vinifera	1615425_at	CF603397	-	-	1e+0	At4g32860	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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