Gene omics information

Query gene ID Zm.13906.1.A1_x_at
Gene name R2R3MYB-domain protein
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9599.6Zm.13906.1.A1_x_atAF099374.1R2R3MYB-domain protein-7e-14At5g40330MYB23 (MYB DOMAIN PROTEIN 23)S.X.H.G.
0.4149.7Zm.17114.1.S1_atCF042058hypothetical protein LOC100192903-1e-24At4g36690ATU2AF65AS.X.H.G.
0.3844.2Zm.5967.1.A1_atAI665973RNA polymerase IV second largest subunit-6e-21At3g23780NRPD2AS.X.H.G.
0.3336.0ZmAffx.275.1.S1_atAI670403--9e+0At4g27450unknown proteinS.X.H.G.
0.3233.4Zm.5851.12.A1_atBI644197hypothetical protein LOC100275208-2e+0At3g4946060S acidic ribosomal protein-relatedS.X.H.G.
0.2622.7Zm.13265.1.S1_atAY110086.1--1e-3At1g12240ATBETAFRUCT4S.X.H.G.
0.2521.3Zm.6414.1.A1_atAY107198.1--5e-5At3g53500zinc knuckle (CCHC-type) family proteinS.X.H.G.
0.2521.3Zm.154.1.S1_atBM339072actin-1-3e-108At5g09810ACT7 (ACTIN 7)S.X.H.G.
0.2216.9ZmAffx.567.1.S1_atAI714637Hypothetical protein LOC100192551-2e-1At5g50760auxin-responsive family proteinS.X.H.G.
0.2216.9Zm.6923.1.S1_atAY104489.1--8e-1At5g01410RSR4 (REDUCED SUGAR RESPONSE 4)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
41.799.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
40.499.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.699.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.399.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.699.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.499.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.498.8GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.398.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.398.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.697.9GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.144e-44174Zm.584.1.S1_a_atU57002.1pericarp color1-1e-8At2g47460MYB12 (MYB DOMAIN PROTEIN 12)C.G.S.X.
0.141e-31133Zm.584.4.A1_atAY104089.1pericarp color1-3e-8At4g38620MYB4C.G.S.X.
0.141e-31133Zm.584.4.S1_atAY104089.1pericarp color1-3e-8At4g38620MYB4C.G.S.X.
0.141e-31133Zm.584.3.S1_a_atM73029.1pericarp color1-3e-8At4g38620MYB4C.G.S.X.
0.141e-31133Zm.584.4.S1_a_atAY104089.1pericarp color1-3e-8At4g38620MYB4C.G.S.X.
0.061e-1063Zm.15854.1.S1_atCK370725--4e-39At4g38620MYB4C.G.S.X.
0.094e-1061Zm.13870.1.S1_atAY237128.1myb-related protein c1-I-2K1-4e-4At5g35550TT2 (TRANSPARENT TESTA 2)C.G.S.X.
0.313e-856Zm.13870.2.A1_atAF099435.1R2R3MYB-domain protein-2e-5At5g40330MYB23 (MYB DOMAIN PROTEIN 23)C.G.S.X.
0.313e-856Zm.13870.2.S1_s_atAF099435.1R2R3MYB-domain protein-2e-5At5g40330MYB23 (MYB DOMAIN PROTEIN 23)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.127e-1475Arabidopsis thalianaAt5g40330834031MYB23 (MYB DOMAIN PROTEIN 23)Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.---C.G.S.X.
0.172e-238Glycine maxGma.162.1.A1_x_atAB029270.1GmMYB13 protein-2e-7At4g34990AtMYB32 (myb domain protein 32)C.G.S.X.
0.065e-1061Hordeum vulgareContig9252_atContig9252--2e-47At4g38620MYB4C.G.S.X.
0.125e-754Oryza sativaOs04g0517100AF467733.1-Myb protein1e-5At3g12820AtMYB10 (myb domain protein 10)C.G.S.X.
0.193e-444Populus trichocarpaPtpAffx.210564.1.S1_atpmrna20726hypothetical protein-4e-14At5g40330MYB23 (MYB DOMAIN PROTEIN 23)C.G.S.X.
0.152e-134Triticum aestivumTaAffx.39148.1.S1_x_atCA730325--5e-9At3g13890ATMYB26 (MYB DOMAIN PROTEIN 26)C.G.S.X.
0.074e+028Vitis vinifera1613670_atCB339429--5e-1At1g14315-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage